Threading protocols

Programming Optimization and a Double Statistical Filter for Protein Threading Protocols. 

On the other hand, there are many matches due to the sequence alignment that are not detected by threading. Because we do not incorporate family profiles in our threading protocol, we do not include here a systematic comparison with the results of PsiBLAST [59]. However, we found examples... 

Pressure design of straight-threaded joints shall be based on calculations consistent with design requirements of this Code. These calculations shall be substantiated by testing in accordance with to-be-determined procedures and protocols. The testing shall consider such factors as assembly and disassembly, cyclic loading, vibration, shock, hydrogen embrittlement, thermal expansion and contraction, and other factors to be determined. 

Yoon I, Narita M, Shimizu T, Asakawa M (2004) Threading-followed-by-shrinking protocol for the synthesis of a [2]rotaxane incorporating a Pd(II)-salophen moiety. J Am Chem Soc 126 16740-16741... 

We require that MPI be thread-safe, and this currently necessitates using the TCP/IP protocol running on IPoIB on our InfiniBand cluster. This results in lower performance than would be obtained with a native InfiniBand interface. 

Often, a scalar (that is, a single variable in a certain memory location) is modified in each pass through a for loop. Contributions to the scalar must be handled in a special way since all threads must update its value using proper locking protocols. This can be accomplished by adding a reduction clause to the line containing a parallel or work-sharing directive. For instance, a dot product routine could be parallelized as ... 

F 7 RB 7 N A fault occurred in both threads. Both threads will be rolled back to the last vahd checkpoint by the rollback protocol and the execntion is retried. 

Figure 18 Synthesis of R18 through the threading-followed-by-shrinking protocol (a). Molecular structure of R18-H C104 [ORTEP (Oak Ridge Thermal Ellipsoid Plot), 30% thermal probability ellipsoids) displaying the intercomponent [N+-H O] and [C-H- -O] hydrogen bonds (b).

Figure 19 Synthesis of R19 through the threading-followed-by-swelling protocol.

The statistical analysis employs only native structures, whereas our LP protocol is using sequences threaded through wrong structures (misthreaded)... 

Parameters of Some of the Threading Potentials Trained Using the LP Protocol"... 

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