Theory-methods package

Clarke, A., Leigh Star, S. (2008). The social worlds framework A theory/methods package. In E. J. Hackett, O. Amsterdamska, M. Lynch, J. Wajeman (Ed.), The handbook of science and technology studies (pp. 113-138). Cambridge, MA MIT Press. 

Many ab initio packages use the two key equations given above in order to calculate the polarizabilities and hyperpolarizabilities. If analytical gradients are available, as they are for many levels of theory, then the quantities are calculated from the first or second derivative (with respect to the electric field), as appropriate. If analytical formulae do not exist, then numerical methods are used. 

Ab-initio CAChe features all of the above plus ab-initio and density functional methods. This program requires a workstation (Windows NT minimum or SGI and IBM unix-based machines) and can be used to build and visualize results from ab-initio programs (e.g., Gaussian, see description under Gaussian, Inc.). Also, CAChe directly interfaces to Dgauss , a computational chemistry package that uses density functional theory to predict molecular structures, properties, and energetics. 

Recently, quantum chemical computational techniques, such as density functional theory (DFT), have been used to study the electrode interface. Other methods ab initio methods based on Hartree-Fock (HF) theory,65 such as Mollcr-PIcsset perturbation theory,66,67 have also been used. However, DFT is much more computationally efficient than HF methods and sufficiently accurate for many applications. Use of highly accurate configuration interaction (Cl) and coupled cluster (CC) methods is prohibited by their immense computational requirements.68 Advances in computing capabilities and the availability of commercial software packages have resulted in widespread application of DFT to catalysis. 

Density functional theory has been extensively used to calculate vibrational properties of minerals and other crystalline phases in addition to molecules and molecule-like substances. This method has recently begun to be used to calculate isotope fractionation factors (Schauble et al. in press Anbar et al. in press), and shows great potential for future research. Programs such as ABINIT (Gonze et al. 2002), pwSCF (Baroni et al. 2001)—both freely available—and the commercial package CASTEP (Accelrys, Inc.) can be used to calculate vibrational properties of crystals. 

Hypercube, Inc. at http //www.hyper.com offers molecular modeling packages under the HyperChem name. HyperChem s newest version, Hyper-Chem Release 7.5, is a full 32-bit application, developed for the Windows 95, 98, NT, ME, 2000, and XP operating systems. Density Functional Theory (DFT) has been added as a basic computational engine to complement Molecular Mechanics, Semiempirical Quantum Mechanics and ab initio Quantum Mechanics. The DFT engine includes four combination or hybrid functions, such as the popular B3-LYP or Becke-97 methods. The Bio+ force field in HyperChem represents a version of the Chemistry at HARvard using Molecular Mechanics (CHARMM) force field. Release 7.5 of HyperChem updates... 

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