Theoretical studies structural effects

Another principal difficulty is that the precise effect of local dynamics on the NOE intensity cannot be determined from the data. The dynamic correction factor [85] describes the ratio of the effects of distance and angular fluctuations. Theoretical studies based on NOE intensities extracted from molecular dynamics trajectories [86,87] are helpful to understand the detailed relationship between NMR parameters and local dynamics and may lead to structure-dependent corrections. In an implicit way, an estimate of the dynamic correction factor has been used in an ensemble relaxation matrix refinement by including order parameters for proton-proton vectors derived from molecular dynamics calculations [72]. One remaining challenge is to incorporate data describing the local dynamics of the molecule directly into the refinement, in such a way that an order parameter calculated from the calculated ensemble is similar to the measured order parameter. 

Theoretical study of the effects of molecular structure and solvation on tautomeric equilibria (SCF-MO-PPP)... 

A detailed spectroscopic and theoretical study of the conformation of dioxolanes 1 has appeared <96T8275>, and a theoretical study has shown that the anomeric effect explains the non-planarity of 1,3-dioxole <96JA9850>. The tetraalkynyldioxolanone 2 has been prepared and its structure and reactivity studied <96HCA634>. Both enantiomers of the chiral glycolic acid equivalent 3 can be prepared from D-mannitol <96HCA1696>, and lipase-mediated kinetic... 

In one of the very first realistic computational studies of PECD effects, performed for the amino acid alanine [51], it was noted that different results were obtained at each of three fixed geometries corresponding to low lying conformations identified in previous structure investigations [69-71]. A later combined experimental-theoretical study of PECD in 3-hydroxytetrahydrofuran [61] further looked at the influence of presumed conformation and concluded that while the predicted cross-section, a, and p parameters were mildly affected by conformation, the chiral parameters were much more strongly... 

Akiyama, R. and Hirata, F. (1998) Theoretical study for water structure at highly ordered surface Effect of surface structure./. Chem. Phys., 108,4904 911. 

Hay, P. J., Martin, R. L., 1998, Theoretical Studies of the Structures and Vibrational Frequencies of Actinide Compounds Using Relativistic Effective Core Potentials With Hartree-Fock and Density Functional Methods ... 

The TEOS content is changed from 50 to 70 wt% to study its effect on the final structure of the materials. Besides an increase of the stiffness and glass transition temperature, a speculated change in structure is observed at 70 wt% TEOS. This change is in line with that anticipated from simple theoretical consideration of composition. 

The close correspondence between the properties of Mu in Si as determined by /u,SR and pLCR and those for the AA9 center produced by implanting hydrogen in silicon shows that Mu in silicon and the AA9 center are isostructural and in fact almost identical. They are neutral isolated bond-centered interstitials. Numerous theoretical studies support this conclusion. The observation of such similar centers for muonium and hydrogen supports the generalization that hydrogen analogs of many of the muonium centers exist. Of course, this assumes that the effects of the larger zero-point vibration of the muon relative to the proton do not make a major contribution to structural differences. The p-SR experiments, reinforced by theory, demonstrate that another structure also exists for muonium in silicon, called normal muonium or Mu. This structure is metastable and almost certainly is isolated neutral muonium at a tetrahedral interstitial site. 

The Diels-Alder reaction (47t 2ir cycloaddition) is by far the best studied reaction of dienes from both theoretical and experimental viewpoints. Frontier molecular orbital theory predicts three types of Diels-Alder reaction. Structural effects on rate constants show the existence of two types of reaction ... 

The theoretical study of the structure of propene was then used as a model to calculate the effect of the structure on the proton affinity, and later to predict the acidity of similar systems such as cycloalkenes46. Deformation of the CCC angle as a function of the stability of the anion was probed, and the results were in agreement with the acidities of the hydrogens of propene. The allylic protons were found to be more acidic than the vinylic ones, which is in contrast to the results of Grundler47. 

Formation of nitrones can be achieved in the first stage of a Krohnke type reaction in which p-n trosodi methy 1 an dine reacts with 2-oo-bromoacetylphenoxathiin in alkaline medium (336). The synthesis of a series of cyclic nitrones of structure (182) has been achieved by regioselective, and by an unusual [3 + 2] cycloaddition of a-nitrosostyrenes (181) to 1,3-diazabuta-l,3-dienes (180) (Scheme 2.64) (337a). Theoretical studies of the substitution effect at the imine nitrogen on the competitive [3 + 2] and [4 + 2] mechanisms of cycloaddition of simple acyclic imines with nitrosoalkenes have been reported (337b). 

A theoretical study at a HF/3-21G level of stationary structures in view of modeling the kinetic and thermodynamic controls by solvent effects was carried out by Andres and coworkers [294], The reaction mechanism for the addition of azide anion to methyl 2,3-dideaoxy-2,3-epimino-oeL-eiythrofuranoside, methyl 2,3-anhydro-a-L-ciythrofuranoside and methyl 2,3-anhydro-P-L-eiythrofuranoside were investigated. The reaction mechanism presents alternative pathways (with two saddle points of index 1) which act in a kinetically competitive way. The results indicate that the inclusion of solvent effects changes the order of stability of products and saddle points. From the structural point of view, the solvent affects the energy of the saddles but not their geometric parameters. Other stationary points geometries are also stable. 

Fraga, S. and Thornton, S. E. Theoretical studies of peptidic structures. Environmental effects, Theor. 

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