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Systems Biology Markup Language

Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, et al. The systems biology markup language (SBML) a medium for representation and exchange of biochemical network models. Bioinformatics 2003 19 524-31. [Pg.161]

SBML [200, 201] The Systems Biology Markup Language http //www. sbml.org/... [Pg.145]

Funahashi, A. (2003) [The ERATO Systems Biology Workbench and Systems Biology Markup Language an integrated environment and standardization for systems biology]. Tanpakushitsu Kakusan Koso 48, 810-816. [Pg.294]

The Systems Biology Markup Language (SBML, http //sbml.org) is a widely used standard for annotating a reaction network with dynamics and biology-specific semantics. It is applicable to static and dynamic models of, for example, cell-signaling pathways, metabolic pathways, biochemical reactions, gene regulation, and many others. An SBML document contains a detailed specification of a biochemical model (e.g., the initial quantities for the entities, kinetic laws for the reactions, etc.). [Pg.329]

Zi, Z. SBML-PET-MPl a parallel parameter estimation tool for Systems Biology Markup Language based models. Bioinformatics 27, 1028-1029 (2011)... [Pg.352]

Zi, Z., Klipp, E. SBML-PET a Systems Biology Markup Language-based parameter estimation tool. Bioinformatics 22, 2704-2705 (2006)... [Pg.352]

See other pages where Systems Biology Markup Language is mentioned: [Pg.154]    [Pg.146]    [Pg.243]    [Pg.243]    [Pg.195]    [Pg.25]    [Pg.99]    [Pg.116]    [Pg.118]    [Pg.960]    [Pg.251]    [Pg.258]    [Pg.31]    [Pg.545]    [Pg.203]    [Pg.333]    [Pg.1044]    [Pg.345]   
See also in sourсe #XX -- [ Pg.116 ]



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Systems Biology Markup Language SBML)

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