Structure triple strand

Another feature of this particular exopolysaccharide is that gel strength depends upon the temperature used. It is constant between 60-80°C, increasing in strength from 80-100°C and finally changing structure from a single to a triple stranded helix at temperatures over 120°C. This makes it particularly well suited for use as a molecular sieve, immobilised enzyme support and a binding agent. 

There are two levels of self-assembly in the formation of tetra-, penta-and hexa-nuclear products from the poly-bipyridyls (L) 20 and 21 and iron(II) salts FeCl2, FeBr2 or FeS04 - the products are anion-dependent. The coordination of three bpy units, from different ligand molecules, to the Fe2+ centers produces a helical structure interaction of these helical strands with anions results in further molecular organization to form the final toroidal product. The discussion draws parallels between the helical and toroidal structures here and secondary and tertiary structure in biological systems (482). Thermodynamic and kinetic intermediates have been characterized in the self-assembly of a di-iron triple stranded helicate with bis(2,2/-bipyridyl) ligands (483). 

A recently discovered subset of triple-stranded /l-helices from bacteriophage tail proteins (alternatively termed triple-stranded /1-solenoids ) represents another distinct group of /1-fibrous folds (Fig. 3B). In these structures, three identical chains related by threefold rotational symmetry wind around a common axis. These chains form unusual parallel /1-sheets with no intra- and only intermolecular -structural hydrogen bonding. Kajava and Steven (this volume) survey the distinguishing structural features of the known triple-stranded /1-solenoids, also documenting their notable diversity and differences in comparison to the single-stranded /1-solenoids. 

All the above-mentioned proteins have single-stranded folds based on solenoidal windings of one polypeptide chain. Recently, however, several triple-stranded /1-helices (alternatively, triple-stranded /l-solenoids ) have been described in bacteriophage tail proteins (Kanamaru et al., 2002 Smith et al., 2005 Stummeyer et al., 2005 van Raaij et al, 2001). In these structures, three identical chains wind around a common axis and their coils have an axial rise of 14.5 A, that is, 3 x 4.83 A (for details see Sections IV and V.D). In this chapter, triple-stranded /l-solenoids will be abbreviated as TS /l-solenoids, while the term /1-solenoid, if not otherwise qualified, will apply to the predominant group of single-stranded /l-solenoids. 

Smith, N. L., Taylor, E.J., Lindsay, A. M., Chamock, S.J., Turkenburg,J. P., Dodson, E.J., Davies, G. J., and Black, G. W. (2005). Structure of a group A streptococcal phage-encoded virulence factor reveals a catalytically active triple-stranded beta-helix. Proc. Natl. Acad. Sci. USA 102, 17652-17657. 

The three-dimensional structural architecture of plant defensins is exemplified by the structure of Rs-AFP, ° which comprises an N-terminal /3-strand followed by an ct-helix and two /3-strands (/3a/3/3 configuration). The /3-strands form a triple-stranded antiparallel /3-sheet. The three-dimensional structure is stabilized by three disulfide bonds. In general, in plant defensins two disulfide bonds form between the ct-helix and the central /3-strand. A third disulfide bond stabilizes the structure by linking the /3-strand after the helix to the coiled part after the ct-helix. This motif is called the cysteine-stabilized a/3-motif (CSa/3)" and also occurs in toxins isolated from insects, spiders, and scorpions.The fourth disulfide bond links the C-terminal end of the peptide with the N-terminal /3-strand. Two plant defensins, PhDl and PhD2, feature a fifth disulfide bond and have been proposed to be the prototypes of a new subclass within plant defensins." As a result of these structural features the global structure of plant defensins is notably different from o //3-thionins, which is one of the reasons for the different nomenclature. The structures of plant defensins Rs-AFP ° and NaDf are shown in Figure 6, where they are compared to the thionin /3-purothionin and the structurally more related drosomycin and charybdotoxin. ... 

Fig. 8. Peptide backbone structure of the designed triple-stranded monomeric /1-sheet Betanova in band and liquorice model representation, coordinates taken from high-resolution NMR structure [9]...

The Watson and Crick model for DNA as a double helix is only a generalized model to describe much more complex structures. Along with the typical double helix there exist structural elements such as supercoils, kinks, cruciforms, bends, loops, and triple strands as well as major and minor grooves. Each of these structural elements can vary in length, shape, location, and frequency. Even the simple DNA double helix can vary in pitch (number of bases per helical turn), sugar pucker conformation, and helical sense (whether the helix is left-or right-handed). 

In tobacco primary cell wall the cellulose microfibrils observed individually or associated with bundles were also triple-stranded and left-hand helical. These observations are shown in Figure 10. Since cellulose is only 19% of the tobacco cell wall (17), the task of finding and identifying cellulose was complicated. For this reason A. xylinum which produces a pure ribbon of cellulose was used for studying cellulose structure. 

Submicrofibril and triple-stranded left-hand helical microfibrils are found in tobacco primary cell wall and bacterial A. xylinum cellulose. We suspect from our results and the literature survey outlined in reference (1) that the triple stranded structures are prominent in the primary plant cell wall. The highly crystalline cellulose of plant and algae secondary cell wall appears by X-ray fiber diffraction (18,19) and TEM lattice imaging (20-23) to be largely crystalline arrays of planar straight chains of (l-4)-/3-D-glucan chains. 

A particularly exotic DNA structure, known as H-DNA, is found in polypyrimidine or polypurine tracts that also incorporate a mirror repeat. A simple example is a long stretch of alternating T and C residues (Fig. 8-23). The H-DNA structure features the triple-stranded form illustrated in Figure 8-22 (a, b). Two of the three strands in the H-DNA triple helix contain pyrimidines and the third contains purines. 

Helix bundles. A third peptide chain can be added to a coiled coil to form a triple-stranded bundle.180-183 An example is the glycoprotein laminin found in basement membranes. It consists of three peptide chains which, for -600 residues at their C-terminal ends, form a three-stranded coil with heptad repeats.182184 Numerous proteins are folded into four helical segments that associate as four-helix bundles (Fig. 2-22).185-188 These include electron carriers, hormones, and structural proteins. The four-helix bundle not only is a simple packing arrangement, but also allows interactions between the + and - ends of the macro-dipoles of the helices. 

The Structure of the a-Keratins Was Determined with the Help of Molecular Models The fi-Keratins Form Sheetlike Structures with Extended Polypeptide Chains Collagen Forms a Unique Triple-Stranded Structure Globular Protein Structures Are Extremely Varied and Require a More Sophisticated Form of Analysis Folding of Globular Proteins Reveals a Hierarchy of Structural Organization... 

Collagen Forms a Unique Triple-Stranded Structure... 

R loop. A triple-stranded structure in which RNA displaces a DNA strand by DNA-RNA hybrid formation in a region of the DNA. 

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