Reaction rule data base

In order to derive precursor compounds, SYNLMA must search the reaction rule data base and match the goal compound with the product side of a reaction rule. This process begins at the top layer, which builds the problem solving tree. It calls the middle layer to add a new branch to the tree. 

If we apply the "6/7" rule (see Sachtler (17) for explanation) typically cited as evidence for the role of molecular O2 in selective epoxidation of ethylene for the case of butadiene epoxidation, we would not expect selectivity for epoxybutene to exceed "11/12", or 91.7%. In fact, selectivities of 93-96% are typically seen at all reaction conditions. Selectivities of 97-98% are observed at differential conditions and lower reaction temperatures. Therefore, based only upon the observed selectivities to epoxybutene, dissociatively-adsorbed oxygen is clearly the active oxygen in butadiene epoxidation. Further, the kinetic model, which has been derived from the kinetic plots in Figure 5 has been used to very satisfactorily fit a wide variety of reaction data from several different reactor formats, assumes dissociatively-adsorbed oxygen at both promoted and unpromoted Ag sites. The oxygen incorporated into epoxybutene is dissociatively-adsorbed oxygen, not molecular oxygen. 

With the present design, a data base of fifty selected starting materials, and two hundred selected reaction rules SYNLMA is currently able to generate synthetic trees, often in a very naive or inefficient manner, for molecules of the size and complexity of Darvon, Ibuprofen,... 

Errors in pruning also cause significant problems. Omitted pruned paths generally resulted from our not using reaction rule constraints or nonselective and/or non-intelligent use of the rules. This is one reason why none of SYNLMA s paths represent published syntheses of Ibuprofen (15) in spite of the fact that the requisite rules were in the data base. On the positive side, the synthetic paths to Ibuprofen discovered by SYNLMA are straightforward and would probably work as shown. 

To derive the maximum amount of information about intranuclear and intemuclear activation for nucleophilic substitution of bicyclo-aromatics, the kinetic studies on quinolines and isoquinolines are related herein to those on halo-1- and -2-nitro-naphthalenes, and data on polyazanaphthalenes are compared with those on poly-nitronaphthalenes. The reactivity rules thereby deduced are based on such limited data, however, that they should be regarded as tentative and subject to confirmation or modification on the basis of further experimental study. In many cases, only a single reaction has been investigated. From the data in Tables IX to XVI, one can derive certain conclusions about the effects of the nucleophile, leaving group, other substituents, solvent, and comparison temperature, all of which are summarized at the end of this section. 

The direct attack of the front-oxygen peroxo center yields the lowest activation barrier for all species considered. Due to repulsion of ethene from the complexes we failed [61] to localize intermediates with the olefin precoordinated to the metal center, proposed as a necessary first step of the epoxidation reaction via the insertion mechanism. Recently, Deubel et al. were able to find a local minimum corresponding to ethene coordinated to the complex MoO(02)2 OPH3 however, the formation of such an intermediate from isolated reagents was calculated to be endothermic [63, 64], The activation barriers for ethene insertion into an M-0 bond leading to the five-membered metallacycle intermediate are at least 5 kcal/mol higher than those of a direct front-side attack [61]. Moreover, the metallacycle intermediate leads to an aldehyde instead of an epoxide [63]. Based on these calculated data, the insertion mechanism of ethene epoxidation by d° TM peroxides can be ruled out. 

In principle, the reaction can take place at temperatures between the glass transition and the melting temperature of the polymer. However, sufficient mobility of the end groups is required to ensure reaction. It has been shown that the reaction doesn t begin until temperatures of 150°C [36] although it doesn t become industrially significant until temperatures above about 200 °C. As a rule of thumb, the reaction rate doubles every 12-13 °C. This is based on the data shown in Figures 4.5 and 4.6 and has been confirmed by others [37],... 

So far, few data are available which allow the comparison of differences in efficacy and selectivity of one catalytic system attached to different supports. As far as the TADDOLate complexes are concerned, no clear rules can be drawn. Polystyrene-based catalysts derived from (8) and (10) show similar enantioselectivities and reaction rates. Differences appear, however, when comparing them with a polystyrene-embedded dendritic ligand system, generated by co-polymerization from TADDOL-derivative (32) (Scheme 4.18) which is described in Section 4.3.2.1. Re-cydabihty seems to be easier for the dendritic catalyst and the enantioselectivity. 

METEOR S biotransformation rules are generic reaction descriptors, and the versatile structural representation used in the system allows each atom or bond to have specific physicochemical properties. This approach provides more details than simple hard-coded functional group descriptors (313), but this flexibility also can give rise to an avalanche of data. METEOR manages the amount of data by predicting which metabolites are to be formed rather than all the possible outcomes (310,312,314,315). At high certainty levels, when chosen, only the more likely biotransformations are requested. At lower likelihood levels, the more common metabolites are also selected for examination. Currently, METEOR knowledge-based biotransformations are exclusively for mammalian biotransformations (phase I and phase II) (314,315). 

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