Quality control peptide positive

Several algorithms are available for the analysis of MS/MS spectra including SEQUEST, MASCOT, and X Tandem among others. Note that additional secondary quality control of assessment of MS/MS data has recently been implemented to assess identification probabilities and false positivity rates. The MS/MS spectra from an experiment can be interrogated against a concatenated forward and reverse database and an assessment of the intrinsic error rate of the data set can be made. Other approaches for secondary analysis of matching scores for peptide sequencing data include XCorr score normalization routines that are independent of peptide and database size.33... 

By the aid of a modified peptide synthesizer solutions of two moles of Boc- or Ddz-amino acid salts (sodium- or triethylammonium form) in tetrahydrofuran or dichloro-methane at —40 °C are mixed for 5 minutes with one mole of phosgene in the same solvent at —40 °C, controlled by the punched tape program of the synthesizer (Fig. 44). The solution of the symmetric anhydride is added at —40 C to the gel polymer, which is contained in the centrifugal reactor (see p. 75) and is allowed to warm up to the cooling water temperature level (9—13 C) of the reactor during the peptide synthesis period of 30 minutes. Since the mode of action of the centrifugal reactor renders it possible to perfuse an external IR flow cell with the reaction solution, we are in a position to monitor directly the quality of the symmetric anhydride and its consumption, watching the characteristic absorptions on 1,830 and 1,760 cm [71]. In several cases the symmetric anhydrides were isolated in crystalline or solid form for characterization (Table 6). 

---