Post-translational structure modifications

Analysis of Peptide and Protein Primary Structures and Post-Translational Structure Modifications... 

Once the spots of interest in a 2-DE gel are selected, the next step is to identify the corresponding proteins in a database. This is another challenge for bioinformatics to design tools adapted to match experimental data with those in sequence databases. Even if the amino acid sequence of a protein can be predicted with a reasonable degree of confidence, post-translational protein modifications cannot always be predicted from the DNA sequence and their presence or absence can be of paramount importance for the final structure, as well as for the function or dysfunction of a protein. Powerful protein identification tools therefore have to take into account information about known post-translational modifications wherever possible. 

The techniques described thus far cope well with samples up to 10 kDa. Molecular mass determinations on peptides can be used to identify modifications occurring after the protein has been assembled according to its DNA code (post-translation), to map a protein structure, or simply to confirm the composition of a peptide. For samples with molecular masses in excess of 10 kDa, the sensitivity of FAB is quite low, and such analyses are far from routine. Two new developments have extended the scope of mass spectrometry even further to the analysis of peptides and proteins of high mass. 

Proteins are highly complex, folded polypeptide chains consisting of at least 20 different amino acids that are strung together in unique sequences, which relate to structure and function. Particular amino acids in proteins may be further modified post-translationally to contain a wide variety of covalent modifications normally found in native proteins. The way in which a peptide chain is wrapped and folded governs each amino acid s relative exposure to the outside environment, but post-translational modifications also can obscure the protein surface from easy access to the solvent environment. 

The principal difference in the overall protein composition of PNS and CNS myelin is that P0 replaces PLP as the major protein, although myelin-forming Schwann cells do express very low levels of PLP. It is interesting to note that PLP and P0 proteins, which are so different in sequence, post-translational modifications and membrane topology, may have similar roles in the formation of structures as closely related as myelin of the CNS and PNS respectively. Expression of P0 in transfected cells results in cell-cell interactions that are due to homophilic binding... 

However, certain limitations do exist that need to be considered. Although enzymes necessary for post-translational modifications can be added, in principle there is currently no productive system available for the preparation of glycosylated proteins, although some interesting results have already been obtained [161]. Also, the expression of functional membrane proteins in quantities necessary for structural analysis will be a challenging task for the future. 

The many (possibly more than 30) types of collagens found in human connective tissues have substantially the same chemical structure consisting mainly of glycine with smaller amounts of proline and some lysine and alanine. In addition, there are two unusual amino acids, hydroxyproline and hydroxylysine, neither of which has a corresponding base-triplet or codon within the genetic code. There is therefore, extensive post-translational modification of the protein by hydroxylation and also by glycosylation reactions. 

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