Phylogenetic structure

Fig. 1.1. The phylogenetic structure of the Nematoda revealed by small subunit ribosomal RNA analysis. (A) Neighbour-joining (NJ) analysis of aligned ssu rRNA genes from nematodes. The alignment is based on that of Blaxter etal. (1998), with the addition of sequences from Aleshin etal. (1998), Nadler (1998)...

Wallin IE (1927) Symbionticism and the origin of species. Williams and Wilkins, Baltimore Watasd S (1893) On the nature of cell organization. Woods Hole Biol Lect 83-103 Wilson EB (1896) The cell in development and inheritance. Macmillan, New York Wilson EB (1925) The cell in development and heredity, 3rd edn. Macmillan, New York Woese CR (1977) Endosymbionts and mitochondrial origins. J Mol Evol 10 93-96 Woese CR (1998) The universal ancestor. Proc Natl Acad Sci 95 6854-6859 Woese CR, Fox GE (1977) Phylogenetic structure ofthe prokaryotic domain the primary kingdoms. Proc Natl Acad Sci USA 74 5088-5090... 

Woese, C.R. and Fox, G.E. 1977a. Phylogenetic structure of the prokaryotic domain the primary kingdoms. Proceedings of the National Academy of Sciences USA, 74,5088-5090. 

Phylogenetic, Structural and Functional Relationships between WD and Kelch-Repeat Proteins 7... 

Biological databases Sequence alignment Gene prediction Molecular phylogenetics Structural bioinformatics Genomics and proteomics... 

Lachance, M.-A., Kaden, I.E., Phaff, H.I., Starmer, W.T. (2001b). Phylogenetic structure of the Sporopachydermia cereana species complex. International... 

Note that I refer to patterns at the community level (i.e. species richness, species replacement or functional diversity) complementarily, Jenkins and colleagues (Chapter 15) propose using microbes to study a series of biogeographical principles at the species level, namely the relationships between species distributions and abundance, body size and niche characteristics, and the phylogenetic structure of species across space. 

Hawkins, B.A. (2010). Multiregional comparison of the ecological and phylogenetic structure of butterfly species richness gradients. Journal of Biogeography 37, 647-656. 

Kallersjo, M., Albert, V.A., and Farris, J.S., Homoplasy increases phylogenetic structure, Cladistics, 15, 91-93, 1999. 

Scoring. Structures were scored against phylogenetic structures by ... 

Woese, C. R. and G. E. Fox. 1977. Phylogenetic structure of the procaryotic domain The primary kingdoms. Proc. 

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