Phosphotyrosine

SH2 domains bind to phosphotyrosine-containing regions of target molecules... 

Figure 13.26 Schematic diagram of the SH2 domain from the Src tyrosine kinase with bound peptide. The SH2 domain (blue) comprises a central p sheet surrounded by two a helices. Three positively charged residues (green) are involved in binding the phosphotyrosine moiety of the bound peptide (red). (Adapted from G. Waksman et al.. Cell 72 779-790, 1993.)...

Figure 13.30 Ribbon diagram of the structure of Src tyrosine kinase. The structure is divided in three units starting from the N-terminus an SH3 domain (green), an SH2 domain (blue), and a tyrosine kinase (orange) that is divided into two domains and has the same fold as the cyclin dependent kinase described in Chapter 6 (see Figure 6.16a). The linker region (red) between SH2 and the kinase is bound to SH3 in a polyproline helical conformation. A tyrosine residue in the carboxy tail of the kinase is phosphorylated and bound to SH2 in its phosphotyrosine-binding site. A disordered part of the activation segment in the kinase is dashed. (Adapted from W. Xu et al.. Nature 385 595-602, 1997.)...

In the activation segment an Arg binds to phosphotyrosine, another Arg binds to the 7 phosphate of ATP and an Asp binds to the Mg atom in the active site. (Adapted from F. Sicheri et al.. Nature 385 602-609, 1997.)... 

These derivatives provide effective protection for phosphotyrosine in Fmoc-based peptide synthesis. They are cleaved with 95% TFA. ... 

PTB domains recognize small peptides containing a phosphotyrosine, usually with the consensus sequence, NPXpY. Some PTB-containing proteins, such as Numb, are able to bind to the consensus peptide in the absence of phosphorylated tyrosine, suggesting phosphotyrosine is dispensable for the function of certain PTB domains. Hydrophobic residues N-termi-nal to the phosphotyrosine provide some specificity of target and distinction from SH2 domains. PTB domains appear to be particularly important in docking... 

Vanadate (sodium orthovanadate or peroxovanadate) exhibits insulin-like effects in vitro (activation of insulin receptor tyrosine kinase, PI 3-kinase, Akt) and in vivo (diabetic rats, humans). These effects can be explained at least in part by the inhibition of phosphotyrosine phosphatases which deactivate the INSR tyrosine kinase. 

Several different types of protein domains are known to function in binding to phosphotyrosine, including... 

Noncatalytic phosphotyrosine binding (PTB) domains are 100-150 residue modules, which bind Asn-Pro-X-Tyr motifs. PTB-domain binding specificity is determined by residues at the amino-terminal side of the phosphotyrosine. In most cases, the tyrosine residue must be phosphorylated in order to mediate binding. PTB domain containing proteins are often found in signal transduction pathways. 

Besides cytoplasmic protein kinases, membrane receptors can exert protein kinase activity. These so-called receptor tyrosine kinases (RTK) contain a ligandbinding extracellular domain, a transmembrane motif, and an intracellular catalytic domain with specificity for tyrosine residues. Upon ligand binding and subsequent receptor oligomerization, the tyrosine residues of the intracellular domain become phosphory-lated by the intrinsic tyrosine kinase activity of the receptor [3, 4]. The phosphotyrosine residues ftmction as docking sites for other proteins that will transmit the signal received by the RTK. 

Protein-protein interaction domain that recognizes short sequences containing a phosphotyrosine. Hydrophobic residues N-terminal to the phosphotyrosine residue provide distinction from SH2 domains. Particularly important in assembling protein complexes at activated receptors. 

Phosphotyrosine-Binding (PTB) Domain Molecular Modeling Tyrosine Kinases... 

The first etCCR application has been reported for a partially C— N-labeled phosphotyrosine peptide derived from interleukin-4 receptor ligated to STAT-6 [107] and subsequent studies involve nucleotide cofactors ligated to human recombinant deoxycytidine kinase [108] and epothilone A bound to tubulin [109]. Since etCCR usually involves isotope-labeling schemes for the ligand, its applicability is limited to specific molecular classes. 

Benes CH, Wu N, Elia AE, Dharia T, Cantley LC, Soltoff SP. The C2 domain of protein kinase C-delta is a phosphotyrosine binding domain. Cell 2005 121 (2) 271-280. 

Burke TR Jr, Smyth M, Nomizu M, Otaka A, Roller PP. Preparation of fluoro- and hydroxy-4-(phosphonomethyl)-D,L-phenylalanine suitably protected for a solid-phase synthesis of peptides containing hydrolytically stable analogues of O-phosphotyrosine. J Org Chem 1993 58 1336-1340. 

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