NADPH substrate reduction

Aldehyde reductases are a group of isoenzymes that catalyze the NADPH-specific reduction of aldehydes. Ketones do not serve as substrates for these enzymes. The best substrates for aldehyde reductase are aromatic aldehydes and those aldehydes obtained through metabolism of biogenic amines. The species distribution, specificity, and inhibition of aldehyde reductases have been reviewed (792). 

In a collaboration between the Abelson and Hecht labs [56b], a series of noncoded amino acids were introduced into dihydrofolate reductase (DHFR) to probe substrate binding and the requirement of an aspartic acid residue for catalytic competence. When aspartic acid analogs mono- or disubstituted at the )0-carbon were substituted for the active site aspartic acid residue, the mutant DHFRs were still able to catalyze the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate at 74 - 86 % of the wild-type rate. While hydride transfer from NADPH is not the rate-limiting step for the wild-type enzyme at physiological pH, a kinetic isotope experiment with NADPD indicated that hydride transfer had likely become the rate-limiting step for the mutant containing the )0,)0-dimethylaspartic acid. 

Thus, step 1 involves addition of NADPH and reduction of the flavin, step 2 the addition of oxygen. At step 3, an internal rearrangement results in the formation of a peroxy complex, which then binds the substrate at step 4. The substrate is oxygenated and released at step 5. 

The NADP-dependent TBADH was used for the laboratory-scale preparation of several chiral aliphatic and cyclic hydroxy compounds by reduction of the corresponding ketones. For the regeneration of NADPH, this reduction reaction can be coupled with the TBADH catalyzed oxidation of isopropanol. For the reduction of some ketones it was observed that the reaction rate was increased in the presence of the regenerating substrate isopropanol, for instance in the presence of 0.2 v/v isopropanol, the reduction rate of butanone or pentanone was increased 3-4-fold [57], In some cases, the enantiomeric excess of the reduction reaction is not very high, especially when small molecules are converted, but also for compounds such as acetophenone [138]. 

In ergosterol biosynthesis, side chain alkylation of lanosterol normally takes place to build 24-methylenedihydrolanosterol, which itself is then the substrate for demethylation reactions at and C. The C -demethylation has been studied in detail. It is an oxidative demethylation catalyzed by a cytochrome P -system. The first step involved in this reaction is the hydroxylation of the Cj -methy1-group to form the C -hydroxymethyl derivative. A second hydroxylation and loss of water lead to the C -formyl intermediate, which is hydroxylized a third time to form the corresponding carboxylic acid. Decarboxylation does not directly take place, but proceeds instead by abstraction of a proton from C, followed by elimination and formation of a A 4-double bond. The NADPH-dependent reduction of the A14 -double bond finishes the demethylation reaction. Subsequently, demethylation at has to take place twice, followed by a dehydrogenation reaction in A" -position and isomerization from A8 to A7 and A24(28) to A22. respectively. 

TrxRs are homodimeric flavoproteins [80] that catalyze the NADPH-dependent reduction of thioredoxin (Trx), a ubiquitous 12 kDa protein that is the major protein disulfide reductase in cells [81], and belongs to the pyridine nucleotide-disulfide oxidoreductase family [82]. Each monomer includes an FAD prosthetic group, a NADPH binding site and an active site containing a redox-active selenol group. Electrons are transferred from NADPH via FAD to the active-site selenol of TrxR, which then reduces the substrate Trx [83]. The crystal structure of TrxR is shown in Fig. 13 [84],... 

The Unear tetrapyrrole biUverdin IXa that is a product of the heme oxygenase reaction is the substrate for biliverdin reductase, which catalyzes the NADPH-dependent reduction of biUverdin IXa at the y-methene bridge to form bilirubin IXa (Fig. 22-1). Many of the pathological problems associated with excess production or diminished eUmination of biUrubin are... 

The enzyme 2-C-methyl-D-erythritol-4-phosphate synthetase appears to catalyse a Bilik reaction (Figure 6.10) the substrate l-deoxyxylulose-5-phosphate is converted to the title compound via an intermediate aldehyde, whose carbonyl derives from C3 of the substrate. The first step is thus a Bilik reaction and the aldehyde is subsequently reduced by the enzyme using NADPH as reductant, The X-ray crystal structure of the Escherichia coli enzyme in complex with the promising antimalarial Fosmidomycin (a hydroxamic acid) reveals a bound Mn " coordinated to oxygens equivalent to the substrate carbonyl and 03. The stereochemistry and regiochemistry follow the normal Bilik course, although the crystallographers favour an alkyl shift rather than a reverse aldol-aldol mechanism. The intermediate aldehyde has been shown to be a catalytically competent intermediate. 

FabI catalyzes the NADH- or NADPH-dependent reduction of 0 ,/3-unsaturated enoyl-ACPs in which the proAS hydrogen of the cofactor is transferred as a hydride to the C3 carbon of the substrate. Both hydride transfer and protonation occur on the same face of the double bond sytr. si face at C3 and re face at C2), yielding a product in which the 2R and 3S hydrogens are added during the reaction. Mechanistic studies on the FabI enzyme from M. tuberculosis (InhA) are consistent with a stepwise mechanism, in which hydride transfer generates an enolate intermediate that is subsequently protonated to generate the product. ... 

Although this review concerns those reactions catalyzed by iminium ion formation, it is important to note that there are enzymatic reactions that could logically be catalyzed by iminium ion formation but which are not. Yeast aldolase, for example, is the best known case [26] (see Ch. 6). This enzyme is metal ion dependent, does not demonstrate the loss activity in the presence of both substrate and borohydride, and is sensitive to inhibition by EDTA. The reaction catalyzed by this enzyme is identical to that catalyzed by the imine-forming enzyme, and even has evolved to exhibit the same retention stereochemistry. Another example is A -3-oxosteroid reductase which is responsible for the NADPH-dependent reduction of the enone double bond to the corresponding dihydrosteroid [124]. Even though iminium ion formation would increase the reactivity of this substrate toward the -hydride addition, a demonstrated lack of the required oxygen exchange proves that this does not occur. 

Very-long-chain fatty acids are important components of the lipids of mammalian brain. Their synthesis has been studied by a number of groups, and key features appear to be the use of acyl-CoA substrates, of NADPH for reduction, of malonyl-Co A as the addition unit and the membranous nature... 

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