Molecular systems theoretical-numeric approach

In this chapter, we discuss three theoretical-numerical approaches for studying heat flow in molecular systems. The different methods were developed in order to focus on various aspects of heat flow at the nanoscale, and are applicable at different parameters regimes quantum, semiclassical and classical. Ultimately, developing a unified approach is of great interest [16,17]. 

Although a theoretical approach has been desecrated as to how one can apply the generalized coupled master equations to deal with ultrafast radiationless transitions taking place in molecular systems, there are several problems and limitations to the approach. For example, the number of the vibrational modes is limited to less than six for numerical calculations. This is simply just because of the limitation of the computational resources. If the efficient parallelization can be realized to the generalized coupled master equations, the limitation of the number of the modes can be relaxed. In the present approach, the Markov approximation to the interaction between the molecule and the heat bath mode has been employed. If the time scale of the ultrashort measurements becomes close to the characteristic time of the correlation time of the heat bath mode, the Markov approximation cannot be applicable. In this case, the so-called non-Markov treatment should be used. This, in turn, leads to a more computationally demanding task. Thus, it is desirable to develop a new theoretical approach that allows a more efficient algorithm for the computation of the non-Markov kernels. Another problem is related to the modeling of the interaction between the molecule and the heat bath mode. In our model, the heat bath mode is treated as... 

In this review we will first describe two approaches which we have used to represent atomic and molecular systems without resorting to the B-0 approximations. Next, we will describe two numerical applications of the theory, which led to determining interesting non-adiabatic contributions. In the last section we will consider future theoretical work on a general non-adiabatic approach to an N-particle system with any isotropic interaction potential, including coulombic interaction, which is presently being developed in our group. 

From theoretical and fundamental aspects to recent advances and novel developments in characterization and analysis of polymers, spectroscopy has, over the years, proved itself to be the most popular family of techniques in providing information at molecular levels. MS, ESR, and NMR applications highlighted in this chapter belong to the numerous approaches in the spectroscopic characterization and analysis of polymer systems. 

The general approach is illustrated in detail for the case of aqueous ferrous and ferric ions, and the calculated rate constant and activation parameters are found to be in good agreement with the available experimental data. The formalisms we have employed in studying such complicated condensed phase processes necessarily rely on numerous approximations. Furthermore, some empirical data have been used in characterizing the solvated ions. We emphasize, nevertheless, that (1) none of the parameters were obtained from kinetic data, and (2) this is, as far as we are aware, the first such theoretical determination to be based on fully Ab initio electronic matrix elements, obtained from large scale molecular orbital (MO) calculations. A molecular orbital study of the analogous hexaaquo chromium system has been carried out by Hush, but the calculations were of an approximate, semi-empirical nature, based in part on experi-... 

In the following sections, we shah demonstrate that the observed behavior of electro-optic activity with chromophore number density can be quantitatively explained in terms of intermolecular electrostatic interactions treated within a self-consistent framework. We shall consider such interactions at various levels to provide detailed insight into the role of both electronic and nuclear (molecular shape) interactions. Treatments at several levels of mathematical sophistication will be discussed and both analytical and numerical results will be presented. The theoretical approaches presented here also provide a bridge to the fast-developing area of ferro- and antiferroelectric liquid crystals [219-222]. Let us start with the simplest description of our system possible, namely, that of the Ising model [223,224]. This model is a simple two-state representation of the to-... 

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