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Conformational Changes from Molecular Dynamics Simulations

Nonpolar and dipolar altitudinal rotors (compounds 2 and 3 in Fig. 17.3) have been synthesized. 19F NMR spectroscopy showed that the barrier to rotation in 3 was extremely low in solution. Both systems have then been immobilized on Au(l 11) surfaces and studied with a variety of techniques.57 The results obtained indicated that for a fraction of molecules the static electric field from the scanning tunneling microscopy (STM) tip could induce an orientation change in the dipolar rotor but not in the nonpolar analog (for a recent example of an azimuthal molecular rotor controlled by the STM tip, see Reference 58). Compound 3 can exist as three pairs of helical enantiomers because of the propeller-like conformation of the tetra-arylcyclobutadienes. For at least one out of the three diastereomers, an asymmetric potential energy surface can be predicted by molecular dynamics simulations on application of an alternating electric field.55... [Pg.507]

Wallis and Thompson [61] developed a potential energy surface using these spectroscopic and theoretical data and used it in molecular dynamics simulations to study the chair-to-boat conformational inversion. They followed up this study with simulations of the RDX conformational changes in dense xenon gas as a function of concentration. Since then a great deal more has been learned about the details of the potential from quantum chemistry calculations and could be used to improve the Wallis-Thompson model. [Pg.138]


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Conformation change

Conformational changes

Conformational changes from

Conformational dynamics

Conformations simulations

Dynamic simulation

Dynamical simulations

Molecular Dynamics Simulation

Molecular conformation

Molecular simulations

Simulation from molecular dynamics

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