Minimum topological difference method

STERIMOL and MTD (Minimum Topological Difference) steric parameters to account for steric influences in QSAR of pesticides have been described and applied in the literature. We have recently developed an improved version of the Simon MTD method, i.e. MTD parameters. The MTD and MTD methods will be described. The scope and limitations of the STERIMOL,... 

Balaban et al. (7 ) recently published a method which partly overcomes the above-mentioned problems. This MTD (minimum topological difference) approach is trying to develop an optimal standard molecule by systematically analyzing the shapes of the members in a series in relation to their biological activities. 

In another approach, with an aim to offer a realistic motive towards handling millions of databases and hundreds of descriptors for a fruitful structure-activity relationship (SAR), Putz and coworkers have proposed a unique QSAR model called spectral-SAR (S-SAR) [220], which considers the spectral norm in quantifying toxicity and reactivity with molecular structure. A handful of applications of the S-SAR algorithm in dealing with ecotoxicity, enzyme activity, and anticancer bioactivity are well established [221-227]. The S-SAR model coupled with Element Specific Influence Parameter (ESIP) formulations [228] are also utilized for predicting ecotoxicity measures. QSAR studies on the anti-HIV-1 activity of HEPT (l-[(2-hydroxyethoxy)methyl]-6-(phenylthio)thymine) [229] and further studies involving the minimum topological difference (MTD) method [230, 231] are also reported [232]. 

Kazimirski and Buch [49] foresaw and Takeuchi [51 ] refined a different approximate but fast H-bond topology optimization which can be used as part of a global minimum search. We now describe our version of this method which we call the short topology-altering optimization . 

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