Isomeric structures, molecular dynamics

Nuclear Magnetic Resonance (NMR) spectroscopy is one of the most powerful analytical techniques in organic chemistry for elucidating the molecular structures of chemicals (1,2). Moreover, an NMR spectrum may be used like a fingerprint to identify a chemical by comparing it with its reference spectrum recorded from the authentic chemical under comparable conditions. The spectrum also reveals information on molecular conformation, isomerism, molecular dynamics, and diastereomers (3 6). 

Robinson have analysed the molecular dynamics of cis-trans isomerization and details of the influence of solvent structure. Excluded volume effects and the different sizes of cis and trans isomers have both been taken into account in this model. The... 

Given the dynamic nature of both intermediates and the isomerization of amino acids of side chains occurring during catalysis, it is not surprising that a number of computational studies have provided subtly different structural mechanisms for the acid-alcohol pair in P450 catalysis. Molecular dynamics simulations of the ferrous-dioxygen... 

In Section 2.3 the structural and optical properties of neutral and cationic Na clusters at r = 0 K as functions of size are presented and compared with experimental data recorded at low temperature. The temperature-dependent line-broadening will be illustrated by the example of Na9, since in this case a comparison with experimental data at different temperatures is particularly instructive. In Section 2.4 the results of ab initio molecular dynamics (AIMD) studies on Li9 will serve to show different temperature behavior of distinct types of structures as well as their isomerization mechanisms. The study of possible metal-insulator transitions and segregation into metallic and ionic parts in finite systems carried out on prototypes of nonstoichiometric alkali halide and alkali hydride clusters with single and multiple excess electrons is presented in Section 2.5. A comparison of structural and optical characteristics of Na F and lAnUm (n > m) series allows us to illustrate the influence of different bonding properties. 

To date, neural network potentials have been most frequently applied to represent low-dimensional, molecular PESs. Apart from the central role of molecules in chemistry the main reason for this is certainly the comparably simple mapping of the reference points using electronic structure methods. Low-dimensional NN PESs have been constructed for example for the of ground state and excited state PESs and transition dipole moments of the HCl" ion, " for the OH radical in order to calculate the vibrational levels,for Hi " to calculate rovibrational spectra,for the free H2O molecule, for the dissociation of a Si02 molecule, for the HOOH molecule, for the NOCl molecule, for formaldehyde, for the cis-trans isomerization and dissociation dynamics of nitrous add, " for H + HBr, " for the reaction 0H + H2 H20 + H, for the reaction BeH + H2->BeH2 + H, " for small silicon clusters, " for vinyl bromide, to describe the three-body interaction energies in the H2O-... 

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