Intermediates, hydrogen bond type

Many biological processes involve an "association" between two species in a step prior to some subsequent transformation. This association can take many forms. It can be a weak association of the attractive van der Waals type, or a stronger interaction such as a hydrogen bond. It can be an electrostatic attraction between a positively charged atom of one molecule and a negatively charged atom of another. Covalent bond formation between two species of complementary chemical reactivity represents an extreme kind of association. It often occurs in biological processes in which aldehydes or ketones react with amines via imine intermediates. 

The reaction of benzoxazine in die presence of 2,6-xylenol does not occur until 135 C, presumably because die hydrogen-bonded intermediate depicted for the 2,4-xylenol reaction (Fig. 7.19) cannot occur. All three types of linkages are obtained in diis case. Para-para methylene-linked 2,6-xylenol dimers, obtained from the reaction of 2,6-xylenol with formaldehyde, formed in the decomposition of the benzoxazine (or with other by-products of that process) dominate. Possible side products from benzoxazine decomposition include formaldehyde and CH2=NH, either of which may provide the source of methylene linkages. Hie amount of ortho-para linkages formed by reaction of 2,6-xylenol with benzoxazine is low. Ortho-ortho methylene-linked products presumably form by a decomposition pathway from benzoxazine (as in Fig. 7.18). 

This supramolecular approach has been used as a way to facilitate the crystallization of cuboidal aqua ions and to capture single intermediates present in complex solution mixtures. For example, [M3Q4Clx(H20)9.x] (Q = S, Se) supramolecular adducts have been isolated for x =1-5 from aqueous HCl solutions by varying the acid concentrations where the aggregates contain in each case only one of all possible isomers [46]. In addition to the hydrogen bonds, other kinds of interactions, namely C1---H20, C1---C1 and Q---Q contacts, are also involved in the network propagation. This supramolecular approach has also been efficiently employed for the crystallization of a large number of aqua complexes within the [M3M Q4] cubane-type family, where M is a transition or post-transition metal [47]. 

A mechanistic rationale for the observed cw-selectivity has been proposed based on preorganisation of the Breslow-type intermediate and imine through hydrogen bonding 253, with an aza-benzoin oxy-Cope process proposed. Reaction via a boat transition state delivers the observed cw-stereochemistry of the product (Scheme 12.57). Related work by Nair and co-workers (using enones 42 in place of a,P-unsaturated sulfonylimines 251, see Section 12.2.2) generates P-lactones 43 with fran -ring substituents, while the P-lactam products 252 possess a cw-stereo-chemical relationship. 

This means that the ionization and rearrangement need not be concerted and that symmetrical protonated ethylene can not be a major intermediate in the reaction. A similar experiment with isobutylamine and nitrous acid in heavy water gave products that contained no carbon-deuterium bonds. Since it is known that the -complex formed from isobutylene and acid is in rapid equilibrium with protons from the solvent, none of this can be formed in the nitrous acid induced deamination. This in turn makes it probable that the transition state for the hydrogen migration is of the sigma rather than the -bonded type.261... 

DR. NORTON An excellent attempt to observe such hydrogen bonding was made recently by Fachinetti, et al. [Calderazzo, F. Fachinetti, G. Marchetti, F. Zanazzi, P. F. J. Chem. Soc., Chem. Commun. 1981, 181]. They took hydridocobalttetracarbonyl and triethylamine, and crystallized out a species which one can only describe as the tetracarbonylcobaltate of protonated triethylamine. They proposed some type of interaction between the hydrogen and a face of the cobalt tetrahedral complex, but it was clear that the interaction was almost entirely with nitrogens. The conclusion I would draw is that the complex appears to proceed directly to full protonation of the amine without any observable evidence for a hydrogen bonded intermediate. 

A monotonic decrease of benzene yield from methylpentanes is observed as a function of the hydrogen pressure over both metals (27a, 91a). The intermediates of bond shift type dehydroisomerization are likely to be unsaturated. This points to the McKervey-Rooney-Samman mechanism (55). This pathway obviously has a higher energy barrier over platinum than over palladium as compared with the aromatization of -hexane. This is reflected also by the similar aromatization selectivity (iS r) values of -hexane and methylpentanes over palladium (Table IV). 

Kinetic studies of the reaction of Z-phenyl cyclopropanecarboxylates (1) with X-benzylamines (2) in acetonitrile at 55 °C have been carried out. The reaction proceeds by a stepwise mechanism in which the rate-determining step is the breakdown of the zwitterionic tetrahedral intermediate, T, with a hydrogen-bonded four-centre type transition state (3). The results of studies of the aminolysis reactions of ethyl Z-phenyl carbonates (4) with benzylamines (2) in acetonitrile at 25 °C were consistent with a four- (5) and a six-centred transition state (6) for the uncatalysed and catalysed path, respectively. The neutral hydrolysis of p-nitrophenyl trifluoroacetate in acetonitrile solvent has been studied by varying the molarities of water from 1.0 to 5.0 at 25 °C. The reaction was found to be third order in water. The kinetic solvent isotope effect was (A h2o/ D2o) = 2.90 0.12. Proton inventories at each molarity of water studied were consistent with an eight-membered cyclic transition state (7) model. 

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