Hydrogen template

Cherevko S, Xing X, Chung C-H (2011) Hydrogen template assisted electrodeposition of sub-micrometer wires composing honeycomb-like porous Pb films. Appl Surf Sci 257 8054-8061... 

SCH EME 17.4 Hydrogen templated synthesis of trefoil knot obtained by [3 + 3] macrocycli-zation.2 Right Crystal structure (adapted from CCDC 139484) of trefoil knot with intrastrand H-bonding interactions. H atoms, cyclohexyl, and methyl groups are omitted for clarity. 

The OPLS force field is described in two papers, one discussing parameters for proteins [W. L. Jorgensen and J. Tirado-Rives, J. Amer. Chem. Soc., 110, 1657 (1988)] and one discussing parameters for nucleotide bases [J. Pranata, S. Wierschke, and W. L. Jorgensen, J. Amer. Chem. Soc., 113, 2810 (1991)]. The force field uses the united atom concept for many, but not all, hydrogens attached to carbons to allow faster calculations on macromolecular systems. The amino and nucleic acid residue templates in HyperChem automatically switch to a united atom representation where appropriate when the OPLS option is selected. 

Fig. 8. Rephcation. The amino adenosine X and the pentafluorophenyl ester Y form a hydrogen-bonded dimer XY, prior to reaction between the amine and the activated ester groups (shown in the circle). The reaction product is a <7 -amide conformer cis-Z that isomeri2es to the more stable trans- acnide Z. The rephcative process is cataly2ed by the reaction product Z (also referred to as the template). First, a termolecular complex XYZ is formed from X, Y, and Z.

The amide formation reaction (highlighted by the circle) leads to the production of a hydrogen-bonded dimer (ZZ) of the reaction product Z with the template Z. The dimer is in thermodynamic equilibrium with free template in the reaction medium. 

Apart from the successful imprinting discussed above, the recognition for many templates is far from that is required for the particular application, even after careful optimization of the other factors affecting the molecular recognition properties. Often, a large excess of MAA in the synthesis step is required for recognition to be observed and then only in solvents of low to medium polarity and hydrogen bond... 

An approach to isobacteriochlorins1 ln-e makes use of Pd(II) or metal-free bilatrienes 1 as starting materials. Cyclization of the corresponding bilatriene derivatives is induced by base in the presence of palladium(II) or zinc(II) which exercise a template effect. Zinc can be readily removed from the cyclized macrotetracycles by acid whereas palladium forms very stable complexes which cannot be demetalated. Prior to the cyclization reaction, an enamine is formed by elimination of hydrogen cyanide from the 1-position. The nucleophilic enamine then attacks the electrophilic 19-position with loss of the leaving group present at the terminal pyrrole ring. 

The interaction of the template with monomer and/or the propagating radical may involve solely Van der Waals forces or it may involve charge transfer complexation, hydrogen bonding, or ionic forces (Section 8.3.5.1). In other cases, the monomer is attached to the template through formal covalent bonds (Section 8.3.5.2). 

The nature of the interaction between the monomer and the template is more obvious in cases where specific ionic or hydrogen bonding is possible. For example, /f-vinyl imidazole has been polymerized along a PM A A template301 202 and acrylic acid has been polymerized on a Af-vinylpyrrolidone template.3 The daughter PAA had a similar degree of polymerization to the template and had a greater fraction of isotaclic triads than PAA formed in the absence of the template. 

Crego-Calama M, Reinhoudt DN, ten Cate MGJ (2005) Templation in Noncovalent Synthesis of Hydrogen-Bonded Rosettes. 249 in press Crepy KVL, Imamoto T (2003) New P-Chirogenic Phosphine Ligands and Their Use in Catalytic Asymmetric Reactions. 229 1-40 Cristau H-J, see Taillefer M (2003) 229 41-73... 

Schalley CA, WeUandt T, Briiggemann J,V6gtle F (2004) Hydrogen-Bond-Mediated Template Synthesis of Rotaxanes, Catenanes, and Knotanes. 248 141-200 Scheer M,see Balazs G (2003) 232 1-23... 

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