Glycan Database

Major sequence archives NCBI, EBI/EMBL, DDBJ EBI, PIR-PSD, Swiss-Prot, Glycan Database,... 

N. H. BOLD—A biological O-hnked glycan database. Electrophoresis 1999, 20, 3589-3598. 

Fig. 17. MALDI-TOFMS of O-glycans enriched by a standard glycoblotting protocol using ammonium carbamate from human-milk OPN. Numbers represent the peaks attributable to O-glycans labeled with benzyloxyamine (BOA), and an asterisk indicates the internal standard. The glycan compositions listed in Table I were estimated from measured masses of the glycans by use of the GlycoSuite database. This figure is adapted from ref. 96.

C. A. Cooper, H. J. Joshi, M. J. Harrison, M. R. Wilkins, and N. H. Packer, GlycoSuiteDB A curated relational database of glycoprotein glycan structures and their biological sources. 2003 update, Nucleic Acids Res., 31 (2003) 511-513. 

Figure 4 Overview of mucin-type 0-linked glycoprotein biosynthesis. The production of the eight core structures found in 0-glycans is shown along with the enzymes and nucleotide sugars that are involved in each step. Additional information on the enzymes shown can be found in the KEGG databases (see the Legend for Fig. 3).

GlycosidlQ www.glycosuite.com Joshi et al. (22) Matches MS data to a theoretical fragmentation of a database of reported glycan structures in literature. Not open access and requires subscription. 

OSCAR inferential mles to match MS" fragmentation are constructed de novo, so this tool does not match with glycan structures database and thus is better suited to identify novel structures. 

Compilation of glycan structures from different databases translated using a standardized Glyco-CT XML format. 

Most updated database on bacterial glycan structures and is updated constantly with new stmctures published in literature. 

Glycan NMR database that is integrated with CarbBank. 

Database of glycan epitopes for antibodies and the antibodies that recognize these epitopes. 

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