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Genome Survey Sequences

GenBank HTG division (high-throughput genomic sequences) GenBank GSS division (genome survey sequences)... [Pg.204]

Genomes were surveyed for the presence of putative type I BVMOs by (1) searching for sequence homologs of phenylacetone monooxygenase and (2) filtering for sequences that contain the type I BVMO-sequence motif2 ... [Pg.115]

Proteomics is a child of disparate parents the revolutionary advent of genomic sequencing and the evolutionary extension of mass spectrometry to permit the analysis of peptides. The fusion of these advances initially created a vision of full inventories of proteins in a biological unit, such as a cell, a subcellular fraction, or a physiological fluid. Good progress has been made toward this in some cases [11], but the focus is shifting from encyclopedic surveys toward an emphasis on quantitative... [Pg.346]

Cliften, P.F., et al., "Surveying Saccharomyces Genomes to Identify Functional Elements by Comparative DNA Sequence Analysis," Genome Res., 11,1175-1186 (2001). [Pg.55]

Olivier M. From SNPs to function the effect of sequence variation on gene expression. Focus on a survey of genetic and epigenetic variation affecting human gene expression. Physiol Genomics 2004 16 182-183. [Pg.408]

Proteomics is concerned with the analysis of the complete protein complements of genomes. Thus proteomics includes not only the identification and quantification of proteins, but also the determination of their localization, modifications, interactions, activities, and functions. This chapter focuses on protein sequences as the sources of biochemical information. Protein sequence databases are surveyed. Similarity search and sequence alignments using the Internet resources are described. [Pg.209]

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