Free radical mechanisms reductases

Ribonucleotide reductase is the enzyme that catalyzes synthesis of deoxyribonucleoside diphophosphates (dNDPs) from ribonucleoside diphosphates (rNDPs). Ribonucleotide reductase reduces the hydroxyl at carbon 2 of the ribose sugar in the rNDP to a hydrogen, forming a deoxyribose sugar and a corresponding dNDP. A free-radical mechanism is involved in the reaction. Three classes of ribonucleotide reductases are known. 

Ribonucleotide reductase, the enzyme catalyzing the synthesis of dNDPs from rNDPs, reduces the hydroxyl at carbon 2 to a hydrogen via a free radical mechanism. The following three classes of ribonucleotide reductases are known ... 

In addition to nitric oxide, superoxide, and peroxynitrite, NO synthases are able to generate secondary free radicals because similar to cytochrome P-450 reductase, the reductase domain can transfer an electron from the heme to a xenobiotic. Thus it has been found [158,159] that neuronal NO synthase NOS I catalyzed the formation of CH3CH(OH) radical from ethanol. It was suggested that the perferryl complex of NOS I is responsible for the formation of such secondary radicals. Miller [160] also demonstrated that 1,3-dinitrobenzene mediated the formation of superoxide by nNOS. It was proposed that the enhancement of superoxide production in the presence of 1,3-dinitrobenzene converted nNOS into peroxynitrite-produced synthase and may be a mechanism of neurotoxicity of certain nitro compounds. 

Ribonucleotide reductase is notable in that its reaction mechanism provides the best-characterized example of the involvement of free radicals in biochemical transformations, once thought to be rare in biological systems. The enzyme in E. coli and most eukaryotes is a dimer, with subunits designated R1 and R2 (Fig. 22-40). The R1 subunit contains two lands of regulatory sites, as described below. The two active sites of the enzyme are formed at the interface between the R1 and R2 subunits. At each active site, R1 contributes two sulfhydryl groups required for activity and R2 contributes a stable tyrosyl radical. The R2 subunit also has a binuclear iron (Fe3+) cofactor that helps generate and stabilize the tyrosyl radicals (Fig. 22-40). The tyrosyl radical is too far from the active site to interact directly with the site, but it generates another radical at the active site that functions in catalysis. 

Studies on three different iron—sulfur enzyme systems which all require S-adenosylmethionine (SAM) — lysine 2,3-aminomutase, pyruvate-formate lyase, and anaerobic ribonucleotide reductase — have led to the identification of SAM as a major source of free radicals in living cells (for a recent review, see Atta et ak, 2010). As in the dehydratases, these systems have a [4Fe—4S] centre chelated by only three cysteines with one accessible coordination site. The cluster is active only in the reduced state [4Fe—4S] and appears to combine the two roles described previously, serving both as a ligand for substrate binding and as a redox catalyst (Figure 13.19). Their mechanism again requires that the exposed iron atom of the cluster shifts towards octahedral geometry as it binds... 

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