Solvation, free energies

Four Challenges in IVIoSecula Modelling Free Energies, Solvation, Reactions and Solid-state Defects... 

The basic features of ET energetics are summarized here for the case of an ET system (solute) linearly coupled to a bath (nuclear modes of the solute and medium) [11,30]. We further assume that the individual modes of the bath (whether localized or extended collective modes) are separable, harmonic, and classical (i.e., hv < kBT for each mode, where v is the harmonic frequency and kB is the Boltzmann constant). Consistent with the overall linear model, the frequencies are taken as the same for initial and final ET states. According to the FC control discussed above, the nuclear modes are frozen on the timescale of the actual ET event, while the medium electrons respond instantaneously (further aspects of this response are dealt with in Section 3.5.4, Reaction Field Hamiltonian). The energetics introduced below correspond to free energies. Solvation free energies may have entropic contributions, as discussed elsewhere [19], Before turning to the DC representation of solvent energetics, we first display the somewhat more transparent expressions for a discrete set of modes. 

Table 1). The computed solvation free energy is 1.3 kcal/mol smaller in the LJ solvent, a difference traced to entropic contributions to the free energy. Solvation is entropically unfavorable in both solvents, but more so in water. These results are consistent with water hydrogen bonding playing an important, but not exclusive, role in hydrophobicity.

Free energy perturbation (FEP) theory is now widely used as a tool in computational chemistry and biochemistry [91]. It has been applied to detennine differences in the free energies of solvation of two solutes, free energy differences in confonnational or tautomeric fonns of the same solute by mutating one molecule or fonn into the other. Figure A2.3.20 illustrates this for the mutation of CFt OFl CFt CFt [92]. 

Lynden-Bell R M and Rasaiah J C 1997 From hydrophobic to hydrophilic behavior a simulation study of solvation entropy and free energy of simple solutes J. Chem. Phys. 107 1981... 

Within this framework, by considering the physical situation of the electrode double layer, the free energy of activation of an electron transfer reaction can be identified with the reorganization energy of the solvation sheath around the ion. This idea will be carried through in detail for the simple case of the strongly solvated... 

Similarly, changes must take place in the outer solvation shell diirmg electron transfer, all of which implies that the solvation shells themselves inliibit electron transfer. This inliibition by the surrounding solvent molecules in the iimer and outer solvation shells can be characterized by an activation free energy AG. ... 

For analysing equilibrium solvent effects on reaction rates it is connnon to use the thennodynamic fomuilation of TST and to relate observed solvent-mduced changes in the rate coefficient to variations in Gibbs free-energy differences between solvated reactant and transition states with respect to some reference state. Starting from the simple one-dimensional expression for the TST rate coefficient of a unimolecular reaction a— r... 

Within the framework of the same dielectric continuum model for the solvent, the Gibbs free energy of solvation of an ion of radius and charge may be estimated by calculating the electrostatic work done when hypothetically charging a sphere at constant radius from q = 0 q = This yields the Bom equation [13]... 

Kirkwood generalized the Onsager reaction field method to arbitrary charge distributions and, for a spherical cavity, obtained the Gibbs free energy of solvation in tenns of a miiltipole expansion of the electrostatic field generated by the charge distribution [12, 1 3]... 

As with SCRF-PCM only macroscopic electrostatic contribntions to the Gibbs free energy of solvation are taken into account, short-range effects which are limited predominantly to the first solvation shell have to be considered by adding additional tenns. These correct for the neglect of effects caused by solnte-solvent electron correlation inclnding dispersion forces, hydrophobic interactions, dielectric saturation in the case of... 

Figure A3.8.3 Quantum activation free energy curves calculated for the model A-H-A proton transfer reaction described 45. The frill line is for the classical limit of the proton transfer solute in isolation, while the other curves are for different fully quantized cases. The rigid curves were calculated by keeping the A-A distance fixed. An important feature here is the direct effect of the solvent activation process on both the solvated rigid and flexible solute curves. Another feature is the effect of a fluctuating A-A distance which both lowers the activation free energy and reduces the influence of the solvent. The latter feature enliances the rate by a factor of 20 over the rigid case.

It is possible to detemiine the equilibrium constant, K, for the bimolecular reaction involving gas-phase ions and neutral molecules in the ion source of a mass spectrometer [18]. These measurements have generally focused on tln-ee properties, proton affinity (or gas-phase basicity) [19, 20], gas-phase acidity [H] and solvation enthalpies (and free energies) [22, 23] ... 

Wesolowski T A and Warshel A 1994 Ab initio free energy perturbation calculations of solvation free energy using the frozen density functional approach J. Phys. Chem. 98 5183... 

Wood, R.H. Continuum electrostatics in a computational universe with finite cut-off radii and periodic boundary conditions Correction to computed free energies of ionic solvation. J. Chem. Phys. 103 (1995) 6177-6187. 

McDonald, N. A., Carlson, H. A., Jorgensen, W. L. Free energies of solvation in chloroform and water from a linear response approach. J. Phys. Org. Chem. 10 (1997) 563-576... 

It is often the case that the solvent acts as a bulk medium, which affects the solute mainly by its dielectric properties. Therefore, as in the case of electrostatic shielding presented above, explicitly defined solvent molecules do not have to be present. In fact, the bulk can be considered as perturbing the molecule in the gas phase , leading to so-called continuum solvent models [14, 15]. To represent the electrostatic contribution to the free energy of solvation, the generalized Bom (GB) method is widely used. Wilhin the GB equation, AG equals the difference between and the vacuum Coulomb energy (Eq. (38)) ... 

The total electrostatic free energy G j of a system is given by the sum of the Coulomb energy and the Bom free energy of solvation (Eq. (39)) ... 

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