Folding thermodynamics

Privalov, P. L., and Makhatadze, G. I., 1993. Contributions of hydration to protein folding thermodynamics. II. The entropy and Gibbs energy of hydration. y(9wra z/ of Molecular Biology 232 660-679. 

Irback A, Sjunnesson F. Folding thermodynamics of three beta-sheet peptides a model study. Proteins 2004 56 110-6. 

Irback A, Mohanty S. Folding thermodynamics of peptides. Biophys J 2005 88 1560-9. 

Shimada J, Kussell EL, Shakhnovich El. The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation. J Mol Biol 2001 308 79-95. 

Shakhnovich H. I. Theoretical studies of protein-folding thermodynamics and kinetics. Curr. Op. Str. Biol. (1997) 7(1) 29-40. 

BaUin, J. D., Bharill, S., Fialcowitz-White, E. J., Gryczynski, I., Gryczynski, Z., and Wilson, G. M. (2007). Site-specific variations in RNA folding thermodynamics visualized by 2-aminopurine fluorescence. Biochemistry 46, 13948—13960. 

Matthews and collaborators (see Alber and Matthews, 1987, and references cited therein) have used site-directed mutagenesis, thermodynamic measurements, and X-ray diffraction to develop an understanding of the folding thermodynamics and thermostability of phage T4... 

Makhatadze GI, Privalov PL. Contribution of hydration to protein folding thermodynamics. 1. The enthalpy of hydration. J. Mol. 34. Biol. 1993 232 639-659. 

Shakhnovich EL Protein Folding thermodynamics and dynamics where physics, chemistry, and biology meet. Chem. Rev. 2006 106 1559-1588. 

Ballin JD, Bharill S, Fialcowitz-White EJ, Gryczynski I, Gryczyn-ski Z, Wilson GM. Site-specific variation in RNA folding thermodynamics visualized by 2-aminopurine fiuorescence. Biochemistry 2007 46 13948-13960. 

Proctor DJ, Ma H, Kierzek E, Kierzek R, Gruebele M, Bevilac-qua PC. Folding thermodynamics and kinetics of YNMG RNA hairpins specific incorporation of 8-bromoguanosine leads to stabilization by enhancement of the folding rate. Biochemistry 2004 43 14004-14014. 

Deechongkit, S., Dawson, P. E., and Kelly J. W. (2004) Toward assessing the position-dependent contributions of backbone hydrogen bonding to beta-sheet folding thermodynamics employing amide-to-ester perturbations. J. Am. Chem. Soc. 126, 16762-16771. 

A. Cooper, Heat capacity of hydrogen-bonded networks an alternative vievt> of protein folding thermodynamics, in Biophys. Chem., 2000, 85, 25-39. 

Eugene I. Shakhnovich, Protein Folding Thermodynamics and Dynamics where Physics, Chemistry, and Biology Meet , Chemical Reviews, v. 106, pp. 1559-1588, 2006. 

Denesyuk, N. A., and D. Thirumalai, Coarse-grained model for predicting RNA folding thermodynamics./ouma/ of Physical Chemistry B, 2013. 117(17] pp. 4901-4911. 

---