Field, intramolecular

Mukamel S and Shan K 1985 On the selective elimination of intramolecular vibrational redistribution using strong resonant laser fields Chem. Rhys. Lett. 5 489-94... 

Nesbitt D J and Field R W 1996 Vibrational energy flow in highly excited molecules role of intramolecular vibrational redistribution J. Rhys. Chem. 100 12 735-56... 

Intramolecular quadrupolar 2 Reorientation of the electric field gradient principal axis Dominant for />1 (covalently bonded) [14]... 

Gerber R B, Buch V and Ratner M A 1982 Simplified time-dependent self consistent field approximation for intramolecular dynamics Chem. Phys. Lett. 91 173... 

For the case of intramolecular energy transfer from excited vibrational states, a mixed quantum-classical treatment was given by Gerber et al. already in 1982 [101]. These authors used a time-dependent self-consistent field (TDSCF) approximation. In the classical limit of TDSCF averages over wave functions are replaced by averages over bundles of trajectories, each obtained by SCF methods. 

Gerber, R.B., Buch, V., Ratner, M.A. Time-dependent self-consistent field approximation for intramolecular energy transfer. I. Formulation and application to dissociation of van der Waals molecules. J. Chem. Phys. 77 (1982) 3022-3030. 

A number of issues need to be addressed before this method will become a routine tool applicable to problems as the conformational equilibrium of protein kinase. E.g. the accuracy of the force field, especially the combination of Poisson-Boltzmann forces and molecular mechanics force field, remains to be assessed. The energy surface for the opening of the two kinase domains in Pig. 2 indicates that intramolecular noncovalent energies are overestimated compared to the interaction with solvent. 

The PEF is a sum of many individual contributions, Tt can be divided into bonded (bonds, angles, and torsions) and non-bonded (electrostatic and van der Waals) contributions V, responsible for intramolecular and, in tlic case of more than one molecule, also intermoleculai interactions. Figure 7-8 shows schematically these types of interactions between atoms, which arc included in almost all force field implementations. 

The systematic study of piezochromism is a relatively new field. It is clear that, even within the restricted definition used here, many more systems win be found which exhibit piezochromic behavior. It is quite possible to find a variety of potential appUcations of this phenomenon. Many of them center around the estimation of the pressure or stress in some kind of restricted or localized geometry, eg, under a localized impact or shock in a crystal or polymer film, in such a film under tension or compression, or at the interface between bearings. More generally it conveys some basic information about inter- and intramolecular interactions that is useful in understanding processes at atmospheric pressure as well as under compression. 

Potential functions such as MM+ discussed in Chapter 1 are fine for intramolecular interactions. MD was developed long before such sophisticated force fields became available, and in any case the aims of MM and MD simulations tend to be quite different. MM studies tend to be concerned with the identification of equihbrium geometries of individual molecules whilst MD calculations tend to be concerned with the simulation of bulk properties. Inspection of Figure 2.2 suggests that the intramolecular details ought to be less important than the intermolecular ones, and early MD studies concentrated on the intermolecular potential rather than the intramolecular one. 

A distinguishing feature of the Nicolaou synthesis of rapamycin is the use of a palladium-mediated tandem inter-/intramolecular Stille coupling to construct rapamycin s 31-membered macrolide ring and conjugated triene moiety. This maneuver was unprecedented in the macrolide field,9 and it can be applied to a fully deprotected seco substrate (vide infra). 

The lack of solvent separated pairs raises the question whether some alternative mode of solvation should be considered. The ester group of the penultimate unit of the polymer, or the one preceeding it, could act as a solvating agent. The idea of intramolecular solvation was proposed by several workers in the field 37) and it is supported by the results of nmr studies of polymethyl methacrylate formed under various experimental conditions 38). Hypothetical structures such as those depicted below were proposed 39 h... 

The hydroxypropyl derivative of guar GaM (HPG) was prepared with propylene oxide in the presence of an alkaline catalyst. HPG was subsequently etherified as such with docosylglycidyl ether in isopropanol and presence of an alkaline catalyst [432]. The peculiar features of the long-chain hydrophobic derivatives were ascribed to a balance between inter- and intramolecular interactions, which is mainly governed by the local stress field. 

This configuration has not yet been demonstrated by X-ray studies, perhaps due to the difficulty in obtaining good crystalline samples. Recently, Tzschach reviewed the whole field of intramolecularly pentacoordinate, organotin compounds (198), including the stannatranes. 

Raman intensities of the molecular vibrations as well as of their crystal components have been calculated by means of a bond polarizibility model based on two different intramolecular force fields ([87], the UBFF after Scott et al. [78] and the GVFF after Eysel [83]). Vibrational spectra have also been calculated using velocity autocorrelation functions in MD simulations with respect to the symmetry of intramolecular vibrations [82]. 

The resonance splitting of intramolecular modes in the crystalline state is often called Davydov splitting or factor group splitting . In contrast to the static field effects of the crystal, this splitting is due to the dynamical interaction of the constituents in the primitive cell... 

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