Covalent enzyme attachment

New reactor designs and immobilisation methods have been used to extend the lifetime of lipases in scCC>2 (Lozano et al., 2004). Ceramic membranes have been coated with hydrophilic polymers and the enzyme covalently attached to these. In SCCO2, activities and selectivities were excellent and the half-life of the catalyst was enhanced. It is thought the hydrophilic layer of the membrane protected the enzyme. Operational stability of enzymes has also been increased by using ionic liquid/scC02 biphasic systems (Lozano et al., 2002 Reetz et al., 2003). 

Immobilized enzyme systems, (a) Enzyme non-covalently adsorbed to an insoluble particle (b) enzyme covalently attached to an insoluble particle (c) enzyme entrapped within an insoluble particle by a cross-linked polymer enzyme confined within a membrane. 

The number of alkylamino side-chains introduced into agarose via the cyclic imidocarbonate derivative has been determined by spectroscopic and elemental analyses or by the use of labelled derivatives, and the amount of an enzyme covalently attached to agarose, via the cyclic imidocarbonate derivative, has been measured by five independent methods, which were assessed for use in routine analyses. ... 

Functionalized conducting monomers can be deposited on electrode surfaces aiming for covalent attachment or entrapment of sensor components. Electrically conductive polymers (qv), eg, polypyrrole, polyaniline [25233-30-17, and polythiophene/23 2JJ-J4-j5y, can be formed at the anode by electrochemical polymerization. For integration of bioselective compounds or redox polymers into conductive polymers, functionalization of conductive polymer films, whether before or after polymerization, is essential. In Figure 7, a schematic representation of an amperomethc biosensor where the enzyme is covalendy bound to a functionalized conductive polymer, eg, P-amino (polypyrrole) or poly[A/-(4-aminophenyl)-2,2 -dithienyl]pyrrole, is shown. Entrapment of ferrocene-modified GOD within polypyrrole is shown in Figure 7. 

If the inhibitor combines irreversibly with the enzyme—for example, by covalent attachment—the kinetic pattern seen is like that of noncompetitive inhibition, because the net effect is a loss of active enzyme. Usually, this type of inhibition can be distinguished from the noncompetitive, reversible inhibition case since the reaction of I with E (and/or ES) is not instantaneous. Instead, there is a time-dependent decrease in enzymatic activity as E + I El proceeds, and the rate of this inactivation can be followed. Also, unlike reversible inhibitions, dilution or dialysis of the enzyme inhibitor solution does not dissociate the El complex and restore enzyme activity. 

Lipoic acid exists as a mixture of two structures a closed-ring disulfide form and an open-chain reduced form (Figure 18.33). Oxidation-reduction cycles interconvert these two species. As is the case for biotin, lipoic acid does not often occur free in nature, but rather is covalently attached in amide linkage with lysine residues on enzymes. The enzyme that catalyzes the formation of the lipoamide nk.2Lg c requires ATP and produces lipoamide-enzyme conjugates, AMP, and pyrophosphate as products of the reaction. 

As we began this chapter, we saw that photosynthesis traditionally is equated with the process of COg fixation, that is, the net synthesis of carbohydrate from COg. Indeed, the capacity to perform net accumulation of carbohydrate from COg distinguishes the phototrophic (and autotrophic) organisms from het-erotrophs. Although animals possess enzymes capable of linking COg to organic acceptors, they cannot achieve a net accumulation of organic material by these reactions. For example, fatty acid biosynthesis is primed by covalent attachment of COg to acetyl-CoA to form malonyl-CoA (Chapter 25). Nevertheless, this fixed COg is liberated in the very next reaction, so no net COg incorporation occurs. 

The described procedure allows one to deposit protein, in particular, enzyme, LB films onto the surface of small spheres. Deposited multilayer film was washed in order to leave at the surface only a layer covalently attached to the activated surface. The enzyme... 

In contrast to E. coli, B. subtilis II is a class III enzyme with a covalently attached A domain [19] but its sucrose PTS still lacks its own E-III. Sutrina et al. [18] have recently shown that II° complements B. subtilis II " in sucrose phosphorylation in... 

Rasor and Tischer (1998) have brought out the advantages of enzyme immobilization. Examples of penicillin-G to 6-APA, hydrolysis of cephalospwrin C into 7-ACA, hydrolysis of isosorbide diacetate and hydrolysis of 5-(4-hydroxy phenyl) hydantom are cited. De Vroom (1998) has reported covalent attachment of penicillin acylase (EC 3.51.11) from E.Coli in a gelatine-based carrier to give a water insoluble catalyst assemblase which can be recycled many times, and is suitable for the production of semi-synthetic antibiotics in an aqueous environment. The enzyme can be applied both in a hydrolytic fashion and a synthetic fashion. 6-APA was produced from penicillin-G similarly, 7-ADCA was produced from desa acetoxycephalosporin G, a ring expansion product of penicillin G. 

Covalent attachment of enzymes to surfaces is often intuitively perceived as being more reliable than direct adsorption, but multisite physical interactions can in fact yield a comparably strong and stable union, as demonstrated by several biological examples. The biotin/streptavidin interaction requires a force of about 0.3 nN to be severed [Lee et al., 2007], and protein/protein interactions typically require 0.1 nN to break, but values over 1 nN have also been reported [Weisel et al., 2003]. These forces are comparable to those required to mpture weaker chemical bonds such as the gold-thiolate bond (1 nN for an alkanethiol, and even only 0.3 nN for a 1,3-aUcanedithiol [Langry et al., 2005]) and the poly(His)-Ni(NTA) bond (0.24 nN, [Levy and Maaloum, 2005]). 

DNA polymerase I is a nonessential enzyme, since viable E. coli mutants lack it (pol A). This conclusion is complicated, however, since the enzyme catalyzes three separate chemical reactions. It polymerizes deoxyribonucleoside triphosphates, and it has two exonucleolytic activities, a 3 to 5 activity and a 5 to 3 activity. The pol A - mutants lack only the polymerization activity. Other mutants lacking both the polymerase and the 5 to 3 exonuclease activity are lethal. Thus the exonuclease function is the more important one. This fits with the role of this enzyme in removing damaged DNA segments (DNA repair) and in removing covalently attached RNA from DNA chains. We will later see that small RNAs serve as primers of DNA synthesis. 

The RNA oligonucleotides are complementary to a sequence on one of the strands of the DNA template and base pair with a portion of the DNA molecule. Subsequently, deoxyribonucleotides are covalently attached to the RNA primer. The synthesis of the primer itself is catalyzed by a special RNA polymerase called primase. Similar RNA polymerase-like enzymes are used to prime the synthesis of certain viral DNAs and eukaryotic DNA. 

The supports employed for covalent attachment of enzymes can be classified into two groups a) natural (agarose, dextran, cellulose, porous glass, silica, the optical fiber itself or alumina) and b) synthetic (acrylamide-... 

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