Dynamic effects: organic reactive

According to traditional interpretation of chemical reactivity, the reaction rate and hence the product selectivity are governed by the energy of the TS and its variation. However, ab initio direct MD simulation studies described in this chapter revealed that this is not universally true and that the organic reactivity theory must consider the effect of dynamics explicitly. 

The objective of our research is to incorporate the effect of nature of molecular organization together with that of molecular motions and develop a dynamic model of reactivity in the solid phase. For this purpose, a comprehensive study of solid state... 

Effect of enzyme dynamics on catalytic activity, 41, 317 Effective charge and transition-state structure in solution, 27, 1 Effective molarities of intramolecular reactions, 17, 183 Electrical conduction in organic solids, 16, 159 Electrochemical methods, study of reactive intermediates by, 19, 131 Electrochemical recognition of charged and neutral guest species by redox-active receptor molecules, 31, 1... 

The several theoretical and/or simulation methods developed for modelling the solvation phenomena can be applied to the treatment of solvent effects on chemical reactivity. A variety of systems - ranging from small molecules to very large ones, such as biomolecules [236-238], biological membranes [239] and polymers [240] -and problems - mechanism of organic reactions [25, 79, 223, 241-247], chemical reactions in supercritical fluids [216, 248-250], ultrafast spectroscopy [251-255], electrochemical processes [256, 257], proton transfer [74, 75, 231], electron transfer [76, 77, 104, 258-261], charge transfer reactions and complexes [262-264], molecular and ionic spectra and excited states [24, 265-268], solvent-induced polarizability [221, 269], reaction dynamics [28, 78, 270-276], isomerization [110, 277-279], tautomeric equilibrium [280-282], conformational changes [283], dissociation reactions [199, 200, 227], stability [284] - have been treated by these techniques. Some of these... 

Stability and reactivity of crown-ether complexes, 17, 279 Stereochemistry, static and dynamic, of alkyl and analogous groups, 25, 1 Stereoelectronic control, the principle of least nuclear motion and the theory of, 24, 113 Stereoselection in elementary steps of organic reactions, 6, 185 Steric isotope effects, experiments on the nature of, 10, 1... 

Solvent effects can significantly influence the function and reactivity of organic molecules.1 Because of the complexity and size of the molecular system, it presents a great challenge in theoretical chemistry to accurately calculate the rates for complex reactions in solution. Although continuum solvation models that treat the solvent as a structureless medium with a characteristic dielectric constant have been successfully used for studying solvent effects,2,3 these methods do not provide detailed information on specific intermolecular interactions. An alternative approach is to use statistical mechanical Monte Carlo and molecular dynamics simulation to model solute-solvent interactions explicitly.4 8 In this article, we review a combined quantum mechanical and molecular mechanical (QM/MM) method that couples molecular orbital and valence bond theories, called the MOVB method, to determine the free energy reaction profiles, or potentials of mean force (PMF), for chemical reactions in solution. We apply the combined QM-MOVB/MM method to... 

Time-resolved spectroscopic techniques are important and effective tools for mechanistic photochemical studies. The most widely used of these tools, time-resolved ultraviolet-visible (UV-Vis) absorption spectroscopy, has been applied to a variety of problems since its introduction by Norrish and Porter [1] over 50 years ago. Although a great deal of information about the reactivity of organic photochemical intermediates (e.g., excited states, radicals, carbenes, and nitrenes) in solution at ambient temperatures has been amassed with this technique, only limited structural information can be extracted from such investigations because absorption bands are usually quite broad and featureless. Questions of bonding, charge distribution, and solvation (in addition to those of dynamics) are more readily addressed with time-resolved vibrational spectroscopy. 

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