Domains PRODOM

Corpet, F Gouzy, J. Kahn, D. (1999). Recent improvements of the ProDom database of protein domain families. Nucleic Acids Res 27, 263-7. 

PRODOM Database of protein domains based on BLAST sequence alignment http //www.toulouse.inra.fr/prodom.html INRA, FR, F. Corpet et al. [75]... 

Corpet, F., et al., ProDom and ProDom-CG tools for protein domain analysis and whole genome comparisons. Nucleic Acids Res, 2000. 28(1) p. 267-9. 

DOMO [21] contain protein families and their alignments, so that changes in the proteins can be observed. Sequences also share domains, or modules, and the ProDom [20] and Smart [2] databases contain these domains and the proteins which fit those domains. 

DR PRODOM [Domain structure / List of seq. sharing at least 1 domain]... 

ProDom [20,21] is a collection of protein domain families automatically derived from the Swiss-Prot and TrEMBL databases using a novel approach based on recursive PSI-BLAST searches. 

Servant, F., C. Bru, S. Carrere, E. Courcelle, J. Gouzy, D. Peyruc, and D. Kahn. 2002. ProDom Automated clustering of homologous domains. Brief Bioinform 3 246-51. 

In addition, several databases (with accompanying search tools) have recently been developed for detecting domains and exploring architectures of multidomain proteins Pfam (Bateman et al., 2000), ProDom (Corpet et al., 2000), and SMART (Schultz et al., 1998, 2000). 

Protein sequences are structurally and functionally annotated at Bioverse (http // bioverse.compbio.washington.edu/). The annotations consist of three sections (McDermott and Samudrala, 2003). The sequence section lists similar sequences identified by searches using various methods, including PSI-BLAST. The structure section is composed of secondary and tertiary structure information. The function section combines PROSITE, BLOCK, PRINT, Pfam, ProDOM, SMART and TIGRFAM to match sequences to patterns, domains and famiUes. 

ProDom Protein domain families http //www.toulouse.inra.fr/prodom. html... 

PRODOM Protein domain database http //protein.toulouse.inra.fr/prodom.html... 

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