Decarboxylation, enzymic nonenzymic

Kluger and Brandi (1986b) also studied the decarboxylation and base-catalysed elimination reactions of lactylthiamin, the adduct of pyruvate and thiamin (Scheme 2). These reactions are nonenzymic models for reactions of the intermediates formed during the reaction catalysed by the enzyme pyruvate decarboxylase. The secondary j3-deuterium KIE for the decarboxylation was found to be 1.09 at pH 3.8 in 0.5 mol dm-3 sodium acetate at 25°C. In the less polar medium, 38% ethanolic aqueous sodium acetate, chosen to mimic the nonpolar reactive site in the enzyme, the reaction is significantly faster but the KIE was, within experimental error, identical to the KIE found in water. This clearly demonstrates that the stabilization of the transition state by hyperconjugation is unaffected by the change in solvent. 

Other reactions that mimic the enzymic processes that require pyridoxal phosphate also have been realized. Werle and Koch reported the nonenzymic decarboxylation of histine (9). The racemization of alanine occurs in preference to its transamination when aqueous solutions with polyvalent cations are maintained at pH 9.5. Other amino acids are likewise racemized the order of rates is Phe, Met > Ala > Val > lieu. At lower pH, the dominant reaction is transamination, with pH maxima varying from 4.3-8 with the nature of the metal ion used as catalyst. 

Another early success in biomimetic chemistry concerns reactions promoted by thiamin. In 1943, more than 35 years ago, Ukai, Tanaka, and Dokowa (12) reported that thiamin will catalyze a benzoin-type condensation of acetaldehyde to yield acetoin. This reaction parallels a similar enzymic reaction where pyruvate is decarboxylated to yield acetoin and acetolactic acid. Although the yields of the nonenzymic process are low, it is clearly a biomimetic process further investigation by Breslow, stimulated by the early discovery of Ugai et al., led to an understanding of the mechanism of action of thiamin as a coenzyme. 

Investigations show that the active amino group of acetoacetate decarboxylase—the one that is concerned with the formation of the ketimine intermediate—has an especially low pK (26, 27). Model experiments revealed that amines of low pK are the best nonenzymic catalysts in particular, cyanomethylamine led to a rate of decarboxylation that is only a few orders of magnitude less than that for the enzymic system (28, 29, 30). 

As shown in Figure 8.4, the synthesis of NAD from tryptophan involves the nonenzymic cyclization of aminocarhoxymuconic semialdehyde to quinolinic acid. The alternative metahoUc fate of aminocarhoxymuconic semialdehyde is decarboxylation, catalyzed hy picolinate carboxylase, leading into the oxidative branch of the pathway, and catabolism via acetyl coenzyme A. There is thus competition between an enzyme-catalyzed reaction that has hyperbolic, saturable kinetics, and a nonenzymic reaction thathas linear, first-order kinetics. 

The ring nitrogen of pyridoxal phosphate exerts a strong electron withdrawing effect on the aldimine, and this leads to weakening of all three bonds about the a-carbon of the substrate. In nonenzymic reactions, all the possible pyridoxal-catalyzed reactions are observed - a-decarboxylation, aminotrans-fer, racemization and side-chain elimination, and replacement reactions. By contrast, enzymes show specificity for the reaction pathway followed which bond is cleaved will depend on the orientation of the Schiff base relative to reactive groups of the catalytic site. As discussed in Section 9.3.1.5, reaction specificity is not complete, and a number of decarboxylases also undergo transamination. 

A mechanistic update on enzymic and nonenzymic catalysis of decarboxylation. Chem. Rev. 87, 863—876. 

Following decarboxylation, the two-carbon-TPP adduct is protonated. This compound has also been synthesized and studied (132) interestingly, it does not release acetaldehyde in nonenzymic reactions, whereas it obviously does in the enzymic reaction (132). Conformational control on the enzyme may be responsible. Consistent with this, glyoxylic acid is decarboxylated by pyruvate decarboxylase, but the product, hydroxymethyl-TPP, does not release formaldehyde from the enzyme (132). 

Imidazolone propionate hydrolase catalyzes the enzymatic cleavage of the imidazole ring to yield formi-minoglutamate. The rat liver enzyme has been partially purified. In addition to the enzymic conversion, two nonenzymic spontaneous reactions yield N-formyl-isoglutamine and 4-oxoglutamic acid. In addition to the oxidative pathways for histidine, there exist three other pathways for its use protein synthesis, decarboxylation to yield histamine (see Inflammation), and transaminase. The activity of histidine pyruvic transamination in rat liver is three times that of histidase. The product of the transaminase reaction is imidazole pyruvic acid, which in turn is converted to imidazole acetic acid. 

The nonenzymic reactions of the primary oxidation product in acid also support the proposed structure (Mehler, 1958). In acid solutions the amino group may be hydrolyzed to form the enol of a /3-keto acid, which may be expected to decarboxylate easily. The acid degradation product appears to be identical with a compound obtained by enzymic oxidation of catechol (see page 98). This compound has recently been isolated by Trippet et al. (1960) and characterized as a-hydroxymuconic semialdehyde. 

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