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Databases definition from structure

Multiple alignments of repeats are constructed in an iterative manner. The initial alignment is based on definitions from determined protein structures or else from the literature. In the initial database search step, a profile constructed from the multiple alignment is compared with a sequence database. Top scoring sequences are considered using complementary approaches such as PSI-BLAST and FASTA to provide the two thresholds minimum E value and minimum number of repeats per protein required. After one or two iterations, the final alignment and the thresholds are stored in the SMART database to allow the detection of repeats in any sequence. [Pg.212]

A recent report presented the so-called MultiLevel Chemical Compatibility (MLCC) to determine the similarity of any structure to known drug-compatible compounds from representative databases (124) although by definition incomplete, as all the drug-like space is far from being determined, this and similar tools can... [Pg.199]

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Structural databases

Structural definition

Structuring definition

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