Crystallography biological

Besides the MDL Molfile formal, other file formats are often used in chemistry SMILES has already been mentioned in Section 2.3.3. Another one, the PDB file format, is primarily used for storing 3D structure information on biological macromolecules such as proteins and polynucleotides (Tutorial, Section 2.9.7) [52, 53). GIF (Crystallographic Information File) [54, 55] is also a 3D structure information file format with more than three incompatible file versions and is used in crystallography. GIF should not be confused with the Chiron Interchange Formal, which is also extended with. cif. In spectroscopy, JCAMP is apphed as a spectroscopic exchange file format [56]. Here, two modifications can be... 

Physical, chemical, and biological properties are related to the 3D structure of a molecule. In essence, the experimental sources of 3D structure information are X-ray crystallography, electron diffraction, or NMR spectroscopy. For compounds without experimental data on their 3D structure, automatic methods for the conversion of the connectivity information into a 3D model are required (see Section 2.9 of this Textbook and Part 2, Chapter 7.1 of the Handbook) [16]. 

Section 27 20 The folding of a peptide chain is its tertiary structure The tertiary struc ture has a tremendous influence on the properties of the peptide and the biological role it plays The tertiary structure is normally determined by X ray crystallography... 

The field of steroid analysis includes identification of steroids in biological samples, analysis of pharmaceutical formulations, and elucidation of steroid stmctures. Many different analytical methods, such as ultraviolet (uv) spectroscopy, infrared (ir) spectroscopy, nuclear magnetic resonance (nmr) spectroscopy, x-ray crystallography, and mass spectroscopy, are used for steroid analysis. The constant development of these analytical techniques has stimulated the advancement of steroid analysis. 

Biological fibers, such as can be formed by DNA and fibrous proteins, may contain crystallites of highly ordered molecules whose structure can in principle be solved to atomic resolution by x-ray crystallography. In practice, however, these crystallites are rarely as ordered as true crystals, and in order to locate individual atoms it is necessary to introduce stereochemical constraints in the x-ray analysis so that the structure can be refined by molecular modeling. 

The potential application of self-assembled scaffolds offering exact positioning of biological macromolecules within micron- to milimeter-size DNA- or protein-made crystals for structural analysis by x-ray crystallography was also suggested [5,50]. 

The 1980s saw many important developments in the scientific disciplines that underpin the use of protein crystallography in the pharmaceutical and biotechnology industries. Molecular biology and protein chemistry methods... 

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