Correlation, effects vibrational frequencies

XVII. THE EFFECT OF CORRELATION OF VIBRATIONAL FREQUENCY DISTRIBUTIONS... 

It is worth re-emphasising that there is no experimental evidence for a bond-weakening substituent effect of methyl groups1. This is apparently at odds with a model based on correlating isolated vibration frequencies and anharmonicities amongst the meth-ylsilanes (and other molecules)72. 

Since the stochastic Langevin force mimics collisions among solvent molecules and the biomolecule (the solute), the characteristic vibrational frequencies of a molecule in vacuum are dampened. In particular, the low-frequency vibrational modes are overdamped, and various correlation functions are smoothed (see Case [35] for a review and further references). The magnitude of such disturbances with respect to Newtonian behavior depends on 7, as can be seen from Fig. 8 showing computed spectral densities of the protein BPTI for three 7 values. Overall, this effect can certainly alter the dynamics of a system, and it remains to study these consequences in connection with biomolecular dynamics. 

The effect of core-electron correlation is small, as shown in Table 11.16. It should be noted that the valence and core correlation energy per electron pair is of the same magnitude, however, the core correlation is almost constant over the whole energy surface and consequently contributes very little to properties depending on relative energies, like vibrational frequencies. It should be noted that relativistic corrections for the frequencies are expected to be of the order of 1 cm" or less. ... 

Harmonic IR spectra of C3H2 calculated at the RHF/6-311++G(d,p), MP2/6-31 1++G(d,p) and MP4/6-31 1++G(d,p) levels are reported in Table 3. The results are nicely converging as electronic correlation is progressively included in the wave function. Excellent agreement between theory and experiment is thus obtained at the MP4 level, which allows for a correct treatment of simultaneous correlation effects in coupled vibrations. The only discrepancies which could show up, would proceed from anharmonicity, as illustrated by the CH stretching vibrations which are found shifted to higher frequencies than anticipated. 

As it is now very well known, accurate studies of the water-water interaction by means of ab-initio techniques require the use of larger and flexible basis sets and methods which consider correlation effects [85,94-96], Since high level ab-initio post-Hartree-Fock calculations are unfeasible because of their high computational cost for systems with many degrees of freedom, Density Functional Theory, more economical from the computational point of view, is being more and more considered as a viable alternative. Recently, we have presented [97] results of structural parameters and vibrational frequencies for the water clusters (H20) , n=2 to 8, using the DFT method with gradient corrected density functionals. 

In order to assign more IR signals of 4a, ab initio calculations on Hbdmpza (3b) and 4a were performed. It is well known for the chosen HF/6-31G basis set that calculated harmonical vibrational frequencies are typically overestimated compared to experimental data. These errors arise from the neglecting anharmonicity effects, incomplete incorporation of electron correlation and the use of finite basis sets in the theoretical treatment (89). In order to achieve a correlation with observed spectra a scaling factor (approximately 0.84-0.90) has to be applied (90). The calculations were calibrated on the asymmetric carboxylate Vasym at 1653 cm. We were especially interested in... 

The correlation of the vibrational frequency distributions of two modes can be determined from 2D-IR experiments and such effects are particularly evident in dual frequency experiments. For example, positive correlations between the amide-A and amide-I frequencies apparent from the spectra of acylalaninemethoxide (AcAlaOMe) in Figure 5, imply that when... 

As a first application of a new analytical gradient method employing UHF reference functions, seven different methods for inclusion of correlation effects were employed to optimize the geometry and calculate the harmonic vibrational frequencies and dipole moments of the lowest open-shell states for three simple hydrides including 3Z i SiH2228. As the degree of correlation correction increased, results approached those from the best multiconfiguration SCF calculation. 

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