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BLAST sequence alignment algorithm

Built on the concept of local alignments, FASTA (Lipman and Pearson, 1985) and BLAST (Altschul et al, 1990) provide increasingly rapid sequence alignments strategies and both can be executed via a personal computer. BLAST uses a heuristic approximation algorithm that gains speed at the expense of accuracy of result. The tool finds short... [Pg.523]

The aim of the fust dimension breadth is to reveal sequence-function relationships by comparing protein sequences by sequence similarity. Simple bioinformatic algorithms can be used to compare a pair of related proteins or for sequence similarity searches e.g., BLAST (Basic Local Alignment Search Tool). Improved algorithms allow multiple alignments of larger number of proteins and extraction of consensus sequence pattern and sequence profiles or structural templates, which can be related to some functions, see e.g., under http //www. expasy.ch/tools/ similarity. [Pg.777]

See other pages where BLAST sequence alignment algorithm is mentioned: [Pg.530]    [Pg.815]    [Pg.530]    [Pg.530]    [Pg.815]    [Pg.530]    [Pg.163]    [Pg.59]    [Pg.257]    [Pg.260]    [Pg.266]    [Pg.537]    [Pg.547]    [Pg.74]    [Pg.87]    [Pg.160]    [Pg.192]    [Pg.209]    [Pg.520]    [Pg.443]    [Pg.17]    [Pg.128]    [Pg.254]    [Pg.206]    [Pg.263]    [Pg.263]    [Pg.45]    [Pg.47]    [Pg.252]    [Pg.748]    [Pg.521]    [Pg.524]    [Pg.531]    [Pg.111]    [Pg.53]    [Pg.38]    [Pg.156]    [Pg.294]    [Pg.523]    [Pg.536]    [Pg.128]    [Pg.125]    [Pg.344]    [Pg.2246]    [Pg.1787]    [Pg.613]    [Pg.75]    [Pg.95]    [Pg.151]   
See also in sourсe #XX -- [ Pg.530 ]

See also in sourсe #XX -- [ Pg.530 ]



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Aligned sequence

Alignment algorithm

BLAST sequence

Sequence alignment

Sequencing alignment

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