Biopolymers time scales within

Time scales for various motions within biopolymers (upper) and nonbiological polymers (lower). The year scale at the bottom shows estimates of when each such process might be accessible to brute force molecular simulation on supercomputers, assuming that parallel processing capability on supercomputers increases by about a factor of 1,000 every 10 years (i.e., one order of magnitude more than Moore s law) and neglecting new approaches or breakthroughs. Reprinted with permission from H.S. Chan and K. A. Dill. Physics Today, 46, 2, 24, (1993). 

Analytical chromatographic options, based on linear and nonlinear elution optimization approaches, have a number of features in common with the preparative methods of biopolymer purification. In particular, both analytical and preparative HPLC methods involve an interplay of secondary equilibrium and within the time scale of the separation nonequilibrium processes. The consequences of this plural behavior are that retention and band-broadening phenomena rarely (if ever) exhibit ideal linear elution behavior over a wide range of experimental conditions. First-order dependencies, as predicted from chromatographic theory based on near-equilibrium assumptions with low molecular weight compounds, are observed only within a relatively narrow range of conditions for polypeptides and proteins. 

The hydration dependence studies of the internal protein dynamics of hen egg white lysozyme by and H NMR relaxation have been presented. The relaxation times were quantitatively analysed by the well-established correlation function formalism and model-free approach. The obtained data was described by a model based on three types of motion having correlation times around 10 , 10 and 10 s. The slowest process was shown to originate from correlated conformational transitions between different energy minima. The intermediate process was attributed to librations within one energy minimum, and the fastest one was identified as a fast rotation of methyl protons around the symmetry axis of methyl groups. A comparison of the dynamic behaviour of lysozyme and polylysine obtained from a previous study revealed that in the dry state both biopolymers are rigid on both fast and slow time scales. Upon hydration, lysozyme and polylysine showed a considerable enhancement of the internal mobility. The side chain fragments of polylysine were more mobile than those of lysozyme, whereas the backbone of lysozyme was found to be more mobile than that of polylysine. 

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