Arginine amino acid degradation

The failure of amino acid degradation to go to completion and the relation between maximal destruction and temperature might be attributed to the fact that individual amino acids reacted at different rates at different temperatures. For example certain amino acids, leucine, arginine, methionine, and lysine showed little or no detectable reaction at 100°C after one hour, while others were reactive at this temperature(Table X). At higher temperatures, rate of amino acid degradation was measurable and proportional to the temperature of the reaction. 

Heterocyclic enamines A -pyrroline and A -piperideine are the precursors of compounds containing the pyrrolidine or piperidine rings in the molecule. Such compounds and their N-methylated analogs are believed to originate from arginine and lysine (291) by metabolic conversion. Under cellular conditions the proper reaction with an active methylene compound proceeds via an aldehyde ammonia, which is in equilibrium with other possible tautomeric forms. It is necessary to admit the involvement of the corresponding a-ketoacid (12,292) instead of an enamine. The a-ketoacid constitutes an intermediate state in the degradation of an amino acid to an aldehyde. a-Ketoacids or suitably substituted aromatic compounds may function as components in active methylene reactions (Scheme 17). 

Figure 8.12 Degradation of arginine, histidine, proline and glutamine. These amino acids are all converted to glutamate which can then be degraded to produce oxoglutarate and ammonia. For details, see Appendix 8.3.

Fig. 2. NAPI facilitates H2A, H2B release from nucleosomes that are on positively coiled DNA (A) but not negatively coiled DNA (B). The positively coiled DNA (6.0 kb) with a superhelical density of + 0.05 and negatively coiled DNA (6.0 kb) with a superhelical density of -0.05 were reconstituted with lysine, arginine-labeled histones H3, H4, H2A, H2B by NaCl dialysis from 2.0 M to 1.2 M to 0.6 M to 0.1 M NaCl over a 14 h period. The samples were incubated with NAPI at 35 °C for 5 min and applied to a 5-20% sucrose/100 mM NaCl/40 mM Tris, pH 7.8 gradient. After sedimentation at 200,000 X g for 5 h, fractions were collected and the distribution of DNA (bottom panel) was determined on agarose gel and the distribution of protein (top panel) on SDS-PAGE followed by fluorography. These data are unpublished observations (V. Levchenko and V. Jackson). The deg-H2A is degraded H2A in which a 15 amino acid peptide of the C terminal has been proteolytically removed. When H2A, H2B is no longer present in a nucleosome, the C terminal region is sensitive to proteolysis [126] from a protease which is a minor contaminate in the NAPI preparation.

Plasma should be separated from the blood cells within a few hours. For most amino acids the levels in plasma and red cells are comparable, but glutamate, aspartate, and taurine have extremely high intracellular levels and thus tend to rise in plasma upon hemolysis. A second effect of red cell degradation is the liberation of the enzyme arginase, which will convert arginine into ornithine. 

Degradation of L-arginine by Streptomyces griseus is initiated by a hydroxylase that causes decarboxylation and conversion of the amino acid into an amide (Eq. 24-26), a reaction analogous to that catalyzed by the flavin-dependent lysine oxygenase (Eq. 18-41). The... 

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