Aptamer protein complexes, analysis

Another method for the analysis of aptamer-protein complexes involved the use of a positively charged ferrocene-tethered polythiophene, (19), as redox label reporting unit (Fig. 12.19). The antithrombin aptamer was immobilized on an electrode surface, and the electrostatic binding of the redox polymer (19) to the aptamer monolayer resulted in a supramolecular complex that revealed electrical contact between the polymer and the electrode.74 The formation of the aptamer-thrombin complex removed the polymer from the surface and blocked the electrical contact between the polymer label and the electrode. As a result, higher concentrations of thrombin increased the surface coverage of the aptamer-thrombin complex on the electrode, and this decreased the amperometric responses of the sensing device. 

Indirect amplified electrochemical analysis of aptamer-protein complexes has employed nanoparticles as labels for the development of electrochemical aptasensors. The use of metal nanoparticles as tracers for the analysis of nucleic acid... 

We further addressed the use of the nucleic acids as biopolymers for the formation of supramolecular structures that enable the electronic or electrochemical detection of DNA. Specifically, we discussed the use of aptamer/low-molecular-weight molecules or aptamer/protein supramolecular complexes for the electrical analysis of the guest substrates in these complexes. Also, nucleic acid-NPs hybrid systems hold a great promise as sensing matrices for the electrical detection of DNA in composite three-dimensional assemblies. While sensitive and selective electrochemical sensors for DNA were fabricated, the integration of these sensor configurations in array formats (DNA chips) for the multiplexed analysis of many DNAs can also be envisaged. 

Berezovski. M., Nutiu, R., Li, Y., Krylov, S. N. (2003). Affinity analysis of a protein-aptamer complex using nonequilibrium capillary electrophoresis of equilibrium mixtures. Anal Chem 75, 1382-1386. 

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