Protecting group alloc

Removal of Alloc Protecting Group from Resin 10 or 19... 

The alloc protective group is cleaved by palladium providing a secondary amine, which is alkylated by (Z)-2-iodo-2-butenyl tosylate to give the corresponding vinyl iodide in 96 % yield. The latter vinyl... 

The N protecting group is cleaved by the appropriate patented method, (ref. 4). For the cleavage of the N-ALLOC protecting group, the drying step can be avoided. 

A SPOS approach to DNA synthesis was reported very recently. It involves a ten-step synthesis of a phosphoramidite building block of I -aminomethylthymidine starting from 2-deoxyribose [46]. Microwave-mediated deprotection of a corresponding N-allyloxycarbonyl (alloc-) protected nucleoside and acylation with the residue of pyrene-l-ylbutanolic acid (pyBA) were described (Scheme 16.25). Removal of the alloc protecting group was achieved on a support (controlled pore glass, cpg) under microwave conditions (80 °C, 10 min) to ensure full conversion. 

When the N-alloc protecting group of primary amines such as benzylamine is cleaved rapidly imder these standard conditions in quantitative yields, the use of a 40-fold excess of diethylamine as the 7t-allyl scavenger or a five-fold excess of diethylamine in a butyronitrile/water system is necessary for the quantitative deprotection of aUoc derivatives of secondary amines. 

The reaction mechanism (Scheme 6.25) involves formation of a cationic 7t-allylpalladium complex by the oxidative addition of the substrate onto the catalyst. In case of a dimethylallyloxycarbonyl protecting group this step is disfavoured compared to Alloc and therefore the removal of dimethylallyl groups is slower or requires more catalyst. Accordingly, in homogeneous CH3CN/H2O solutions deprotection of (allyl)phenylacetate proceeded instantaneously with 2 mol % [Pd(OAc)2]/TPPTS while it took 85 min to remove the dimethylallyl group (cinnamyl is an intermediate case with 20 min required for complete deprotection). The reactivity differences are... 

A fourth urethane protecting group, the TV-allyloxycarbonyl group (Alloc) is introduced in the usual way using allyl chloroformate or diallyl dicarbonate. Its main interest concerns its removal by a Pd-catalysed hydrostannolysis with tri-butyltin hydride (Scheme 7.4). It thus provides orthogonal protection without the need to expose the peptide to acid, conditions that would cleave, for example, O-gly-coside derivatives of peptides. 

The conversion of the BOC group to other carbamates is achieved by heating with an alcohol, Ti(0-i-Pr)4 in toluene. Teoc-, Cbz- and Alloc-protected primary amines have been prepared in this fashion. The reaction is selective for a primary BOC derivative probably because the reaction proceeds through an isocyanide. ... 

Another instance for this linker class is the safety-catch linker by Lyttle, which was developed for the synthesis of nucleic acids on solid supports [62]. Starting from a resin carrying an Alloc-protected amino group fragment, conventional phosphoramidite chemistry was carried out to build up the desired immobilized nucleotide 57. Removal of the Alloc group via palladium catalysis under neutral conditions produces a polymer-bound intermediate 58 with a free amino functionality that can intramolecularly attack activated phosphonates and liberate the nucleotide 59 from the solid support (Scheme 16.14). More examples of safety-catch linkers that use the deprotection of an N-functionality as the activation step are listed in Table 16.1 (resins 61-65) [63-68]. 

In the SAPPHO process, the N-tert-butyloxycarbonyl (N-t-BOC), the N-allyloxycarbonyl (N-ALLOC), and the N,N-diallyl can be used for the protection of the alpha amino function. The functional side chains can be protected by different classical orthogonal protecting groups. 

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