3D-JIGSAW

Bates, R A., L. A. Kelley, R. M. MacCallum, and M. J. Sternberg. 2001. Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM. Proteins S5 39-46. 

One more site that can easily generate homology models is 3D-Jigsaw [15] (http //www.bmm.icnet.uk/ 3djigsaw/). Unfortunately it cannot presently be used interactively to obtain a list of structures. 

We have described the role structure-based design plays in lead identification. This is one of the more well developed areas, with a plethora of programs (see Tables 1 -3), and where computational methods have been relatively successful. Some aspects of the molecular docking problem have been solved. Many programs can reassemble components of a complex within 1 A rmsd of the experimental structure. That is, when the conformation of both the receptor and ligand are known and fixed, the 3D jigsaw puzzle has been solved. 

---