Three-dimensional structure modeling

Fritz G, Heizmann CW, Kroneck PM. 1998. Probing the structure of the human Ca2+- and Zn2+-binding protein S100A3 spectroscopic investigations of its transition metal ion complexes, and three-dimensional structural model. Biochim Biophys Acta 1448(2) 264-276. 

The functional significance of this multitude of Chi alb proteins is unknown. Based on primary structure data and the hydropathy plot of the polypeptide chain, a three-dimensional structure model of the LHC II complex with three transmembrane segments (40% helices) was proposed for Lemna gibba (Fig. 15) [195]. This... 

Fig. 15. Three-dimensional structure model of the LHC II (Chi a/b-protein) of Lemna gibba with three helical transmembrane segments in the thylakoid membrane (Karlin-Neumann et al. [195]).

Figure 2.43 Structure of lTQ-22. (a) [4458612] cage (b) framework viewed along c axis (c) three-dimensional structure model showing the 8- and 12-ring channels that are intersected by the sinusoidal 10-ring pore (black ribbon). Reproduced with permission from [ 113], Copyright (2003) Nature Publishing...

In order to compensate for these advantages of the boys in spatial ability, an early training with three-dimensional structural models in chemistry lessons could be especially helpful for the girls. With this in mind, structural models or model drawings mentioned in this chapter should be constructed and discussed (see Fig. 4.2). The observation of many other additional chemical structures will be examined in Sect. 5. 

Figure 5.20 Proposed three dimensional structural model of HM carbon fiber depicting interlinked crystallinity.

Figure 5.21 A probable three dimensional structural model for a PAN based HM carbon fiber. Source Reprinted with permission from Barnett FR, Norr MK, Proceedings of the International Conference on Carbon Fibres, their Composites and Applications, London (Plastics Institute), 32, 1974. Copyright 1974, Maney Publishing (who administers the copyright on behalf of lOM Communications Ltd., a wholly owned subsidiary of the Institute of Materials, Minerals Mining).

Since a three-dimensional structural model for tRNA is available, the spatial locations of the cross-linked sites within this structure can be identified. This, in turn, gives a picture of the way in which the enzyme lies across the nucleic acid. Details of these types of analyses have been presented. ... 

Mizushina Y, Kasai N, Sugawara F, lida A, Yoshida H, Sakaguchi K (2001) Three-dimensional structural model analysis of the binding site of lithocholic acid, an inhibitor of DNA polymerase P and DNA topoisomerase II. J Biochem 130(5) 657-664... 

Figure 11 Proximity-field nanopatteming of three-dimensional structures. (a and b) Schematic drawing of the procedure used to emboss a film of photopolymer with an elastomeric mask bearing relief structures. The embossed film serves as its own phase mask. The pattern of constructive and destructive interference within the photopolymer film produces a three-dimensional structure modeled in (c) and (d), and shown in the SEM images in (e) and (f). Reproduced with permission from Shir D. Nelson, E. C. Chen, Y. C. etal. Appl. Phys. Lett. 2009,94, 011101. Copyright 2009, American Institute of Physics.

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