Termini definition

The aldehyde oxidoreductase from Desulfovibrio gigas shows 52% sequence identity with xanthine oxidase (199, 212) and is, so far, the single representative of the xanthine oxidase family. The 3D structure of MOP was analyzed at 1.8 A resolution in several states oxidized, reduced, desulfo and sulfo forms, and alcohol-bound (200), which has allowed more precise definition of the metal coordination site and contributed to the understanding of its role in catalysis. The overall structure, composed of a single polypeptide of 907 amino acid residues, is organized into four domains two N-terminus smaller domains, which bind the two types of [2Fe-2S] centers and two much larger domains, which harbor the molybdopterin cofactor, deeply buried in the molecule (Fig. 10). The pterin cofactor is present as a cytosine dinucleotide (MCD) and is 15 A away from the molecular surface,... 

This pardaxin model is not unique. We have developed several similar models that are equally good energetically and equally consistent with present experimental results. It is difficult to select among these models because the helices can be packed a number of ways and the C-terminus appears very flexible. Our energy calculations are far from definitive because they do not include lipid, water, ions, membrane voltage, or entropy and because every conformational possibility has not been explored. The model presented here is intended to illustrate the general folding pattern of a family of pardaxin models in which the monomers are antiparallel and to demonstrate that these models are feasible. 

The positional preferences of amino acids, for either the N- or C-terminus of peptides, have varied when reported on by different groups. The differences in rankings may be due to differences in methods used to determine the ranking. Statistical methods apply different definitions and assumptions, while mutation studies suffer from inherent differences in environments, as well as short- and long-range interactions. Despite the differences, however, certain general observations have been made. 

Zhang, X., Boyar, W., Toth, M. J., Wennogle, L., and GonneUa, N. C. (1997). Structural definition of the C5a G terminus by two-dimensional nuclear magnetic resonance spectroscopy. Proteins 28, 261-267. 

Glycosylphosphatidyl inositol anchors constitute a class of glycolipids that link proteins and glycoproteins via their C-terminus to eukaryotic cell membranes. The first structure of a GPI anchor, that of Trypanosoma brucei, was published by Ferguson et al. [262]. Since then quite a few examples of GPI anchors were described, allowing the definition of the core structure depicted inO Scheme 37 [263]. 

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