Stability geometric leveling

Figure 2.3 Schematic of the four stabilization methods (a) geometric leveling during conformal deposition (attimes tn through t5) in a feature with a non-reentrant sidewall angle ...

Trioxane 210 has been used as a model system by Gu and coworkers to study the antimalarial drug artemisinin 211 (Scheme 137) [97CPL234, 99JST103]. It is the boat/twist form rather than the chair conformer of 210 that describes the subunit in 211. Moreover, geometric parameters and vibrational frequencies can only reliably be computed at the DFT level and by post-Hartree-Fock methods. B3-LYP/6-31G calculations on the conformers of 3,3,6,6-tetramethyl-1,2,4,5-tetroxane show that the chair conformer is stabilized with respect to the twisted conformer by about -2.8 kcal/mol [00JST85]. No corresponding boat conformer was found. 

A theoretical study at a HF/3-21G level of stationary structures in view of modeling the kinetic and thermodynamic controls by solvent effects was carried out by Andres and coworkers [294], The reaction mechanism for the addition of azide anion to methyl 2,3-dideaoxy-2,3-epimino-oeL-eiythrofuranoside, methyl 2,3-anhydro-a-L-ciythrofuranoside and methyl 2,3-anhydro-P-L-eiythrofuranoside were investigated. The reaction mechanism presents alternative pathways (with two saddle points of index 1) which act in a kinetically competitive way. The results indicate that the inclusion of solvent effects changes the order of stability of products and saddle points. From the structural point of view, the solvent affects the energy of the saddles but not their geometric parameters. Other stationary points geometries are also stable. 

The planar form of phosphole is a first-order saddle point on the potential energy surface, 16—24 kcal/ mol above the minimum (at different levels of the theory). ° (The calculated barriers are the highest at the HF level, which underestimates aromatic stabilization of the planar saddle point, while the MP2 results are at the low end.) It has been demonstrated by calculation of the NMR properties, structural parameters, ° and geometric aromaticity indices as the Bird index ° and the BDSHRT, ° as well as the stabilization energies (with planarized phosphorus in the reference structures) ° and NIGS values ° that the planar form of phosphole has an even larger aromaticity than pyrrole or thiophene. 

Effects of Isomerism Geometrical isomers of coordination compounds can exhibit different values of redox potential, as accounted for, in various cases, by simple djr orbital level splitting diagrams or by MO calculations. The dependence of the relative stability and redox behavior of the geometrical isomers on the electronic configuration of the metal is also... 

We have used a different approach to compare the aromaticities of phosphole (8) and pyrrole (10) [23, 24], From literature data on derivatives of 8 and 9 it is known that the inversion barrier of phosphole is about 67 kJ mol-1 (70.2 kJ mol-1 at the B3LYP/aug-cc-pVTZ level) [25] while that of tetrahydrophosphole amounts to 163 kJ mol-1. This is explained by the fact that the planar transition state of 8 is highly aromatic. Pyrrole (10) is planar and pyrrolidine has a calculated inversion barrier of 15-17 kJ mol-1. Several aromaticity indices were used in this study, based on different criteria of aromaticity energetic (aromatic stabilization energy, ASE), geometric (harmonic oscillator model of aromaticity, HOMA, and /5), and magnetic (NICS). 

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