Sequencing graph examples

Consider a sequencing graph G, V,E,6). Let T vi) represent the start time of Vi, i.e. the time at which begins execution with respect to the source vertex of G,. Detailed timing constraints consist of the following  

---

A votex to which / is defined is called a hardware-bound vertex otherwise it is called an hardware-unbound valex. If there are no hardware-unbound vertices in V, then is a complete binding otherwise, it is a partial binding. Figure 5.3 shows a binding j3 defined on the sequencing graph example of Figure S.2 for the allocation a(.A) = 2, a B) = 1. ... 

A vector of molecular topological descriptors can be calculated for the whole iterated line graph sequence. For example, a line graph Randic connectivity index was calculated as ... 

Example Sequencing graph model Implementation Resources ... 

Figure 4.4 The sequencing graph for the Greatest common divisor example, applies to call and loop vertices. Table 4.2 summarizes these properties.

Figure 4.S Tlie sequencing graph for the encoder and decoder processes in the Error correcting code example.

Figure 4.10 Example of latching outputs for (a) a sequencing graph containing a sequence of addition operations, all bound to the same resource component, and (b) the corresponding latching requirements.

Figure S.2 Example of sequencing graph with 3 calls to model A and 2 calls to model B, where V = Al, A2, A3,Bl,B2],...

Examples of different resource bindings for a sequencing graph containing 4 calls are shown in Figure 5.4 (b) through (e). All operations grouped by the... 

A path is a sequence of distinct lines which are connected to each other. For example, in Fig. 7.1a, AECGD is a path. A graph forms a single component if any two points are joined by a path. Thus Fig. 7.16 has two components and Fig. 7.1a has only one. 

Returning to the example sequence in Scheme 4.7 and using the minimum values of AE determined and setting the reaction yields also as minimum values, it is possible to evaluate the probabilities that each reaction will have an RME of at least 0.618 and also the probability that both reactions will achieve it simultaneously. Figures 4.10 and 4.11 illustrate the relevant regions in the graphs. We can conclude that the probabilities for the Petasis condensation and the coupling reaction are 77% and 94%, respectively. Since the reactions are independent of each other, that is, the individual probabilities are mutually exclusive, the combined probability that both reactions will have RME values of at least... 

Although this chapter did not discuss much about the amino acid sequence analysis per se, such as sequence comparison, motif detection, and structure prediction, the sequence analysis is a prerequisite of the network analysis. In fact, the network analysis is an integrated analysis of sequence and other information. For example, in the graph comparison of two pathways, it is not only the overall arrangements of nodes... 

Fig. 12.1. Dot plot, secondary structure graph, and mountain plot for die example sequence...

---