Ribosomal RNA processing

Ginisty H, Amalric F, Bouvet P (1998) Nucleolin functions in the first step of ribosomal RNA processing. Embo J 17 1476-1486... 

Capowski, E.E. and Tracy, J.W. (2003) Ribosomal RNA processing and the role of SmMAKI 6 in ribosome biogenesis in Schistosoma mansoni. Molecular and Biochemical Parasitology 132, 67-74. 

Fibrillarin. A component of a nucleolar small nuclear ribo-nucleoprotein, functioning in vivo in ribosomal RNA processing. 

FibiiUaiin-assodated SnoRNAs that function in pre-ribosomal RNA processing. See Morrissey, J. P., and ToUervey, D. (1995) Trends Biochem. Sci. 20, 78—82. 

The discovery of nbozymes (Section 28 11) in the late 1970s and early 1980s by Sidney Altman of Yale University and Thomas Cech of the University of Colorado placed the RNA World idea on a more solid footing Altman and Cech independently discovered that RNA can catalyze the formation and cleavage of phosphodiester bonds—exactly the kinds of bonds that unite individual ribonucleotides in RNA That plus the recent discovery that ribosomal RNA cat alyzes the addition of ammo acids to the growing peptide chain in protein biosynthesis takes care of the most serious deficiencies in the RNA World model by providing precedents for the catalysis of biologi cal processes by RNA... 

Both Ribosomal RNAs Most Transfer RNAs Are Processed From Larger Precursors... 

All four scientists whose work led to modification of the dogmas received the Nobel Prize. Thomas Cech (1987) was the first to observe enzyme-like reactions taking place at the same RNA strand, in ribosomal RNA (rRNA) from the proto-zoon Tetrahymena thermophila. The RNA produced, which is completely viable, is formed in a process in which certain sections (introns) of the primary copy (the transcription of DNA to mRNA) are cut out, the two remaining ends of the exon then being rejoined (spliced). 

Gene expression Entire process that translates the information coded in a gene into RNA and proteins. Expressed genes are transcribed into mRNA and subsequently translated into protein or they remain as RNA (e.g., transfer and ribosomal RNAs). 

Ribonucleic acid (RNA) Molecules including messenger RNA, transfer RNA, ribosomal RNA, or small RNA. RNA serves as a template for protein synthesis and other biochemical processes of the cell. The structure of RNA is similar to that of DNA except for the base thymidine being replaced by uracil. 

The next process is similar in both eukaryotes and prokaryotes, and involves the translation of mRNA molecules into polypeptides. This procedure involves many enzymes and two further types of RNA transfer RNA (tRNA) and ribosomal RNA (rRNA). There is a specific tRNA for each of the amino acids. These molecules are involved in the transportation and coupling of amino acids into the resulting... 

Ginisty H, Serin G, Ghisolfi-Nieto L, Roger B, Libante V, Amalric F, Bouvet P (2000) Interaction of Nucleolin with an Evolutionarily Conserved Pre-ribosomal RNA Sequence Is Required for the Assembly of the Primary Processing Complex. J Biol Chem 275 18845-18850 Ginisty H, Sicard H, Roger B, Bouvet P (1999) Structure and functions of nucleolin. J Cell Sci 112 761-772... 

Mitochondria, which are cytoplasmic organelles involved in cellular respiration, have their own chromosome, which contains 16,569 DNA base pairs (bp) arranged in a drcalar molecule. This DNA encodes 13 proteins that are subunits of complexes in the electron transport and oxidative phosphorylation processes (see Section 1, Chapter 13). In addition, mitochondrial DNA encodes 22 transfer RNAs and two ribosomal RNAs. 

In protein synthesis, there are three classes of RNA to worry about ribosomal RNA, rRNA messenger RNA, mRNA and transfer RNA, tRNA. All three classes of RNA play key roles in the final stage of the process the biosynthesis of proteins. However, we are going to take this one step at a time. We turn attention first to the... 

Figure 12.17 Sites at which insulin stimulates protein synthesis in a muscle. The sites are indicated by 0. Insulin has its anabolic effect on protein synthesis in muscle by affecb ng six processes or reactions (i) it inhibits protein degradab on in the muscle (ii) it sb mulates amino acid transport from the blood into the muscle (iii) it stimulates the inib ab on-reacb on of the pathway for protein synthesis, i.e. formab on of the complex (tRNA-amino acid-mRNA-ribosomal RNA) (iv) it increases the rate of mRNA synthesis, and therefore the number of mRNA molecules (v) it stimulates ribosomal RNA synthesis (vi) it sb mulates elongabon of the pepbde (see Chapter 20).

Cellular RNAs vary widely in their size, structure, and lifespan. The great majority of them are ribosomal RNA (rRNA), which in several forms is a structural and functional component of ribosomes (see p.250). Ribosomal RNA is produced from DNA by transcription in the nucleolus, and it is processed there and assembled with proteins to form ribosome subunits (see pp.208, 242). The bacterial 16S-rRNA shown in Fig. A, with 1542 nucleotides (nt), is a component of the small ribosomae subunit, while the much smaller 5S-rRNA (118 nt) is located in the large subunit. 

Almost all of the RNA in the cell is synthesized in the nucleus, in this process, known as transcription, the information stored in DNA is transcribed into RNA (see p. 242). As mentioned above, ribosomal RNA (rRNA) is mainly produced in the nucleolus, while messenger and transfer RNA (mRNA and tRNA) are formed in the region of the euchromatin. Enzymatic duplication of DNA—replication—also only takes place in the nucleus (see p. 240). 

Transcription is catalyzed by DNA-dependent RNA polymerases. These act in a similar way to DNA polymerases (see p. 240), except that they incorporate ribonucleotides instead of deoxyribonucleotides into the newly synthesized strand also, they do not require a primer. Eukaryotic cells contain at least three different types of RNA polymerase. RNA polymerase I synthesizes an RNA with a sedimentation coef cient (see p. 200) of 45 S, which serves as precursor for three ribosomal RNAs. The products of RNA polymerase II are hnRNAs, from which mRNAs later develop, as well as precursors for snRNAs. Finally, RNA polymerase III transcribes genes that code for tRNAs, 5S rRNA, and certain snRNAs. These precursors give rise to functional RNA molecules by a process called RNA maturation (see p. 246). Polymerases II and III are inhibited by a-amanitin, a toxin in the Amanita phalloides mushroom. 

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