ProDom, protein database

PRODOM Protein domain database http //protein.toulouse.inra.fr/prodom.html... 

Corpet, F Gouzy, J. Kahn, D. (1999). Recent improvements of the ProDom database of protein domain families. Nucleic Acids Res 27, 263-7. 

PRODOM Database of protein domains based on BLAST sequence alignment http //www.toulouse.inra.fr/prodom.html INRA, FR, F. Corpet et al. [75]... 

Interpro Combination of the major protein family databases (PRINTS, PROSITE, Pfam, ProDom) Cl dl. http // www.ebi.ac.uk/ interpro/ EBI, Cambridge, R. Apweiler et al. [76, 300]... 

DOMO [21] contain protein families and their alignments, so that changes in the proteins can be observed. Sequences also share domains, or modules, and the ProDom [20] and Smart [2] databases contain these domains and the proteins which fit those domains. 

ProDom [20,21] is a collection of protein domain families automatically derived from the Swiss-Prot and TrEMBL databases using a novel approach based on recursive PSI-BLAST searches. 

In addition, several databases (with accompanying search tools) have recently been developed for detecting domains and exploring architectures of multidomain proteins Pfam (Bateman et al., 2000), ProDom (Corpet et al., 2000), and SMART (Schultz et al., 1998, 2000). 

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