Principal-component analysis classical techniques

In organic chemistry, decomposition of molecules into substituents and molecular frameworks is a natural way to characterize molecular structures. In QSAR, both the Hansch-Fujita " and the Free-Wilson classical approaches are based on this decomposition, but only the second one explicitly accounts for the presence or the absence of substituent(s) attached to molecular framework at a certain position. While the multiple linear regression technique was associated with the Free-Wilson method, recent modifications of this approach involve more sophisticated statistical and machine-learning approaches, such as the principal component analysis and neural networks. ... 

It is clear that for an unsymmetrical data matrix that contains more variables (the field descriptors at each point of the grid for each probe used for calculation) than observables (the biological activity values), classical correlation analysis as multilinear regression analysis would fail. All 3D QSAR methods benefit from the development of PLS analysis, a statistical technique that aims to find the multidimensional direction in the X space that explains the maximum multidimensional variance direction in the F space. PLS is related to principal component analysis (PCA)." ° However, instead of finding the hyperplanes of maximum variance, it finds a linear model describing some predicted variables in terms of other observable variables and therefore can be used directly for prediction. Complexity reduction and data... 

The technique of principal component analysis was applied to a set of 12 characteristics associated with aromaticity, including the two above, using a variety of heterocyclic compounds <89JA7>. Three principal components, were found that accounted for most of the variance of the data. Characteristics associated with classical aromaticity, such as the two mentioned above, were dominated by the first component and those associated with magnetic properties, such as the molar susceptibility, were dominated by the second. The In score for oxazole was low, of 16 compounds, only furan was lower. On the other hand, the ii2 score was one of the higher scores. 

Chapter 4 retrieves the basic ideas of classical univariate calibration as the standpoint from which the natural and intuitive extension of multiple linear regression (MLR), arises. Unfortunately, this generalization is not suited to many laboratory tasks and, therefore, the problems associated with its use are explained in some detail. Such problems justify the use of other more advanced techniques. The explanation of what the multivariate space looks like and how principal components analysis can tackle it is the next step forward. This constitutes the root of the regression methodology presented in the following chapter. 

Because of peak overlappings in the first- and second-derivative spectra, conventional spectrophotometry cannot be applied satisfactorily for quantitative analysis, and the interpretation cannot be resolved by the zero-crossing technique. A chemometric approach improves precision and predictability, e.g., by the application of classical least sqnares (CLS), principal component regression (PCR), partial least squares (PLS), and iterative target transformation factor analysis (ITTFA), appropriate interpretations were found from the direct and first- and second-derivative absorption spectra. When five colorant combinations of sixteen mixtures of colorants from commercial food products were evaluated, the results were compared by the application of different chemometric approaches. The ITTFA analysis offered better precision than CLS, PCR, and PLS, and calibrations based on first-derivative data provided some advantages for all four methods. ... 

Experience in this laboratory has shown that even with careful attention to detail, determination of coal mineralogy by classical least-squares analysis of FTIR data may have several limitations. Factor analysis and related techniques have the potential to remove or lessen some of these limitations. Calibration models based on partial least-squares or principal component regression may allow prediction of useful properties or empirical behavior directly from FTIR spectra of low-temperature ashes. Wider application of these techniques to coal mineralogical studies is recommended. 

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