PIRSF

PIRSF http //pir.georgetown.edu/pirsf/ Family/superfamily classification... 

Fig. 1. (A) Selected PIRSF response regulator families all containing the CheY-Uke phosphoacceptor domain (Pfam domain PF00072) and (B) domain display of the selected PIRSF famihes.

Fig. 2. PIRSF protein family report. Includes (A) DAG browser displaying the PIRSF family hierarchy (B) taxonomy tree browser displaying the taxonomy distribntion of all family members (C) tree viewer with neighbor-joining tree and (D) alignment viewer displaying ClnstalW mnltiple alignment of seed members. This report can be viewed directly at http //pir.georgetown.edu/ cgi-bin/ipcSF id=PIRSF000514.

The PIRSF reports connect to several graphical viewers, including (i) DAG browser, which displays the PIRSF family hierarchy with Pfam domain superfamilies and protein membership in a network structure (Fig. 2A) (ii) taxonomy tree browser, which displays the taxonomy distribution of all family members and the... 

Fig. 4. Complete predicted Proteomes Tool for the NIAID Biodefense Proteomics Research Program (http //pir.geoigetown.edu/pirwww/proteomics/). Tool allows interactive text mining of selected complete proteomes. Features include over 50 fields for Boolean text searches customizable display and export links to master catalog of experimental data from NlAlD Proteomics Research Centers and links to various reports on additional protein information like UniProt, iProClass, BioThesaurus, and PIRSF reports.

Protein AC/ID Protein Name Organism Name PIRSF Family ID iMatched Fields... 

Wu, C.H., Nikolskaya, A., Huang, H. et al., PIRSF family classification system at the Protein Information Resource. Nucleic Acids Res., 32, D112-D114 (2004). 

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