Phylogenetic microarrays

Rajilic-Stojanovic M, Heilig HG, Molenaar D, et al. Development and application of the human intestinal tract chip, a phylogenetic microarray analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults. Environ Microbiol. 2009 11 1736-1751. 

Salonen A, Nikkila J, Jalanka-Tuovinen J, et al. Comparative analysis of fecal DNA extraction methods with phylogenetic microarray effective recovery of bacterial and archaeal DNA using mechanical cell lysis. J Microbiol Methods. 2010 81(2) 127—134. 

MicrobesOnline a phylogenetic approach to the analysis of microbial genes and genomes (5) currently (January 2012) includes 1,750 bacterial, 94 archaean, and 119 eukaryotic genomes as well as data from several thousand gene expression experiments (i.e., microarray data). 

A Science Primer. NCBI, NLM, NIH. 2004. URL http // www.ncbi.nlm.nLh.gov/Ahout/primer/index.html. Bioinformatics, genome mapping, molecular modeling, SNPs, ESTs, microarray technology, molecular genetics, pharmacogenomics, and phylogenetics. 

ToolBus comprises several data analysis software platforms such as multiple sequence alignment, phylogenetic trees, generic XML viewer, pathways, and microarray analysis, which are linked to each other as well as to major databases. SRS and NCBI serve as general data retrieval portals as well as provide links to specific analysis tools. 

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