Molecular dynamics frequency response analysis

The increase in time resolution of advanced sorption uptake methods and the joint use of sorption and radio-spectroscopic techniques allow for a more detailed analysis of the so-called "non-Fickian" behaviour of sorbing species in the intracrystalline bulk phase [18,28,29,76]. Correspondingly, information on molecular dynamics has been obtained for n-butane and 2-but ne in NFI zeolites by means of the single step frequency response method and C n.m.r. line-shape analysis [29]. As can be seen from Figures 4 and 5, the ad- / desorption for both sorbates proceeds very quickly, but with a... 

An innovative approach due to Haider et al. [113] may help to sidestep the challenges involved in explicit molecular dynamics simulation and obtain information on these slow dynamics. The authors use the results of dielectric reflectance spectroscopy to model the IL as a dielectric continuum, and study the solvation response of the IL in this framework. The calculated response is not a good description of the subpicosecond dynamics, a problem the authors ascribe to limited data on the high frequency dielectric response, but may be qualitatively correct at longer times. We have already expressed concern regarding the use of the dielectric continuum model for ILs in Section IV. A, but believe that if the wavelength dependence of the dielectric constant can be adequately modeled, this approach may be the most productive theoretical analysis of these slow dynamics. 

Second, the positions and llneshapes of resonances arising from potentially mobile parts of the peptide (e,g, side chains) have revealed dynamical aspects of the solid-state structures of peptides. The analysis of molecular motions is simplified In the solid state by the absence of overall molecular tumbling, which modulates spin interactions and leads to complex frequency -dependent spectral responses. In particular, signals arising from aromatic ring side chains are well separated from other resonances, and may be interpreted in terms of reorientation models of these side chains. Such ring dynamics are of great importance in protein structures, and studies with model peptides can help elucidate fundamental aspects of these processes. 

Dynamic mechanical techniques are important in the characterization of the rheological properties of polymers. In dynamic mechanical analysis, a small-amplitude oscillatory strain is applied to a sample, and the resulting dynamic stress is measured as a function of time. The dynamic mechanical technique allows the simultaneous measurement of both the elastic and the viscous components of the stress response. Typically, the temperature and deformation frequencies are changed in order to determine the mechanical relaxation spectrum of the system. The molecular basis of changes in the dynamic mechanical properties can be investigated using dynamic IR dichroism. 

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