Metalloproteases catalytic domains

The matrix metalloprotease (MMP) family of zinc hydrolases are thought to play important roles in extracellular tissue remodeling in angiogenesis and other normal physiological processes, in some inflammatory processes and in metastatic processes in cancer. Like the zinc carboxypeptidases, the MMPs also utilize a zinc-coordinated water molecule to initiate attack on the scissile amide bond of protein substrates. These enzymes are synthesized by the ribosome in a latent form composed of a catalytic domain and an N-terminal extension, referred to as the prodomain the latent, or inactive form of the enzyme is referred to as a zymogen or... 

The central feature that defines all DUBs is that they recognize and act at the C-terminus of the ubiquitin or ubiquitin-like domain. All mature ubiquitin and ubiquitin-like proteins have a C-terminal gly-gly motif and DUB cleavage releases leaving groups attached to the carboxyl group of the C-terminal glycine. With the exception of the JAMM metalloproteases, DUB catalysis starts with the nucleophilic attack of the catalytic cysteine on the carbonyl carbon of the scissile bond to... 

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