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Low-complexity regions

Low-copy repeat locus control region low-complexity region... [Pg.13]

The default wordsize for a blastp search is three the default substitution matrix is the blosum62 matrix. Changing the wordsize from three to two increases the sensitivity of the search. Using a different substitution matrix can also have an effect on search sensitivity. During a blastp search, low-complexity regions of the query sequence are filtered to reduce the construction of spurious alignments and enhance search speed (see Note 4). [Pg.155]

The masking of low-complexity by the SEG filter will introduce X in place of the low complexity region or depict them in lower case depending on the user s choice. [Pg.185]

Prepare the input sequences carefully by masking or removing repetitive features that are not of interest such as ALUs, SINES, and low-complexity regions. Filtering programs such as DUST, XNU, SEG, and RepeatMasker can help to do this. [Pg.287]

Do not remove low complexity regions Don t print frequency solution... [Pg.410]

The query sequence is filtered for low complexity regions by default. [Pg.201]

Does the protein contain any low-complexity regions If so, where ... [Pg.279]

See other pages where Low-complexity regions is mentioned: [Pg.149]    [Pg.152]    [Pg.154]    [Pg.360]    [Pg.699]    [Pg.168]    [Pg.225]    [Pg.277]    [Pg.515]    [Pg.523]    [Pg.58]    [Pg.77]    [Pg.103]    [Pg.328]    [Pg.206]    [Pg.207]    [Pg.386]    [Pg.613]   
See also in sourсe #XX -- [ Pg.206 , Pg.207 ]



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