Group topological

PMD color or the nature of the electron transitions produces the widest appHcation for PMDs. Depending on the polymethine chain length, the end-group topology, and the electron shell occupation, polymethines can absorb light in uv, visible, and near-ir spectral regions. 

Molecular weight Functional group Topological asymmetry asymmetry asymmetry... 

The value of pK (12.09 and 12.20) is computed for H atoms in hydroxyl groups. Topological indices ... 

Gelemter and Rose [25] used machine learning techniques Chapter IX, Section 1.1 of the Handbook) to analyze the reaction center. Based on the functionalities attached to the reaction center, the method of conceptual clustering derived the features a reaction needed to possess for it to be assigned to a certain reaction type. A drawback of this approach was that it only used topological features, the functional groups at the reaction center, and its immediate environment, and did not consider the physicochemical effects which are so important for determining a reaction mechanism and thus a reaction type. 

Descriptors have to be found representing the structural features which are related to the target property. This is the most important step in QSPR, and the development of powerful descriptors is of central interest in this field. Descriptors can range from simple atom- or functional group counts to quantum chemical descriptors. They can be derived on the basis of the connectivity (topological or... 

Several research groups have built models using theoretical desaiptors calculated only from the molecular structure. This approach has been proven to be particularly successful for the prediction of solubility without the need for descriptors of experimental data. Thus, it is also suitable for virtual data screening and library design. The descriptors include 2D (two-dimensional, or topological) descriptors, and 3D (three-dimensional, or geometric) descriptors, as well as electronic descriptors. 

Group additivity methods must be derived as a consistent set. It is not correct to combine fragments from different group additivity techniques, even for the same property. This additivity approximation essentially ignores effects due to the location of one functional group relative to another. Some of these methods have a series of corrections for various classes of compounds to correct for this. Other methods use some sort of topological description. 

Other techniques that work well on small computers are based on the molecules topology or indices from graph theory. These fields of mathematics classify and quantify systems of interconnected points, which correspond well to atoms and bonds between them. Indices can be defined to quantify whether the system is linear or has many cyclic groups or cross links. Properties can be empirically fitted to these indices. Topological and group theory indices are also combined with group additivity techniques or used as QSPR descriptors. 

Estimation of the influence of end groups by using their topological indexes, Oq and E, has been proposed. The first parameter, Oq, characterizes the shift of the MO modes and the level positions of a PMD containing end groups relative to unsubstituted polymethines. Thus it corresponds to the end-group basicity concept (7). The parameter Oq was found to be related directiy to the electron donor ability 1 = lim ( q. The other index, E,... 

The perturbation of the PMD symmetry is accompanied by a decrease in the charge alternation and by the appearance of bond alternation from one end group to another. The bond alternation ampHtude has been revealed to be proportional to the asymmetry degree, which can be calculated as the difference of topological indexes = 4>gj — 4>gg. The effect is maximum if Tgj > 45° and Tgg < 45°. If A4>j2 = 90°, the ideal polyene state is... 

Electron Level Position. One essential condition of spectral sensitization by electron transfer is that the LUMO of the dye be positioned above the bottom of the conduction band, eg, > —3.23 eV in AgBr or > —4.25 eV in ZnO (108). To provide the desired frontier level position respectively to the valence and conduction bands of the semiconductor, it is necessary to use a polymethine with suitable electron-donor abiHty (Pq. Increasing the parameter (Pq leads to the frontier level shift up, and vice versa. Chain lengthening is known to be accompanied by a decrease of LUMO energy and hence by a decrease of sensitization properties. As a result, it is necessary to use dyes with high electron-donor abiHty for sensitization in the near-ir. The desired value of (Pq can be provided by end groups with the needed topological index Oq or suitable substituents (112). 

The number of possible ways to form antiparallel p structures is very large. The number of topologies actually observed is small, and most p structures fall into these three major groups of barrel structures. The last two groups—the Greek key and jelly roll barrels—include proteins of quite diverse function, where functional variability is achieved by differences in the loop regions that connect the p strands that build up the common core region. 

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