Functional groups ionic bonds

A variety of mechanisms or forces can attract organic chemicals to a soil surface and retain them there. For a given chemical, or family of chemicals, several of these mechanisms may operate in the bonding of the chemical to the soil. For any given chemical, an increase in polarity, number of functional groups, and ionic nature of the chemical can increase the number of potential sorption mechanisms for the chemical. 

Many dyes complex with their primary analyte due to attractive forces such as ionic charges. These charges are susceptible to nonspecific complexation with interfering analytes with characteristics similar to those of the primary analyte. Both the primary and interfering analytes compete for complexation with the same site. The NIR dyes may be synthesized with specific functional groups that will bond more specifically to an analyte. For instance, an isothiocyanate group forms very stable thiourea chemical bonds with proteins or an amino-modified DNA oligomer. The introduction of more specific and reversible functionalities on the dye molecule should minimize the interference of extraneous molecules or ions. 

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